filterArch_ids: Filter the protein architectures based on conserved domains

In geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond

Description

Parse the architecture identifiers and extract those that contain, at least, those selected in the filter.

Usage

filterArch_ids(archs_ids, filter)

Arguments

archs_ids	A string with the architecture identifiers that contain, at least, one of the conserved domains defining the gene family.
filter	A string with the domains (and order) that are required (at least) for the proteins to have.

Value

the architecture identifiers from all the potential protein architectures defined by getArch_ids that contain, at least, the conserved domains explicitily show by the filter.

Author(s)

Jose V. Die

See Also

getArch_ids

Examples

## Not run: 
archs_ids <- getArch_ids("pfam02362")
my_filter <- c("B3_DNA", "Auxin_resp")

filterArch_ids(archs_ids, my_filter) 

## End(Not run)

geneHummus documentation built on May 2, 2019, 6:19 a.m.