getAccessions: Get the acessions ids and the organism for each protein...
In geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/getAccessions.R
Description
The getAccessions function parses the protein page for each identifier
and extracts the accession id (usually referred as XP accession in the RefSeq
database) and the organism given by the scientific name.
The accessions_by_spp and accessions_from_spp functions are
convenient filters for further cleaning of getAccessions by giving
the total number of XP accessions per species or extracting the XP
accessions for a given species, respectively.
Usage
1
getAccessions(protein_ids)
Arguments
protein_ids
A string vector containing protein identifiers.
Value
A data.frame of protein ids including columns:
accession
organism
Author(s)
Jose V. Die
See Also
accessions_by_spp to summarize the total number of
accession proteins per species.
accessions_from_spp to filter the accession ids for
a given species
Examples
1
2
3
prot_ids <- c("593705262", "1379669790", "357520645", "1150156484")
getAccessions(prot_ids)
geneHummus documentation built on May 2, 2019, 6:19 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/getAccessions.R
Description
The getAccessions function parses the protein page for each identifier
and extracts the accession id (usually referred as XP accession in the RefSeq
database) and the organism given by the scientific name.
The accessions_by_spp and accessions_from_spp functions are
convenient filters for further cleaning of getAccessions by giving
the total number of XP accessions per species or extracting the XP
accessions for a given species, respectively.
Usage
1 | getAccessions(protein_ids)
|
Arguments
protein_ids |
A string vector containing protein identifiers. |
Value
A data.frame of protein ids including columns:
accession
organism
Author(s)
Jose V. Die
See Also
accessions_by_spp to summarize the total number of
accession proteins per species.
accessions_from_spp to filter the accession ids for
a given species
Examples
1 2 3 | prot_ids <- c("593705262", "1379669790", "357520645", "1150156484")
getAccessions(prot_ids)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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