extract_proteins: Get the protein identifiers
In geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond
Description
Usage
Arguments
Details
Author(s)
View source: R/extract_proteins.R
Description
Extract the protein identifier for the given taxonomic species, which are
hosted by the RefSeq database (NCBI).
Usage
1
extract_proteins(targets, taxonIds)
Arguments
targets
A string with the electronic links for the SPARCLE architecture.
taxonIds
A string with the taxonomic species identifiers;
legume species (by default).
Details
First, get the protein ids from RefSeq database. Then, extract only the
ids for the selected taxonomic species (by default, legume species).
Author(s)
Jose V. Die
geneHummus documentation built on May 2, 2019, 6:19 a.m.
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Description Usage Arguments Details Author(s)
View source: R/extract_proteins.R
Description
Extract the protein identifier for the given taxonomic species, which are hosted by the RefSeq database (NCBI).
Usage
1 | extract_proteins(targets, taxonIds)
|
Arguments
targets |
A string with the electronic links for the SPARCLE architecture. |
taxonIds |
A string with the taxonomic species identifiers; legume species (by default). |
Details
First, get the protein ids from RefSeq database. Then, extract only the ids for the selected taxonomic species (by default, legume species).
Author(s)
Jose V. Die
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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