accessions_from_spp: Extract the accession ids (XP accession) for a given organism
In geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond

Description Usage Arguments Value Author(s) See Also Examples

Filter a dataframe of protein ids and return the accessions for a given species or organism.

1	accessions_from_spp(my_accessions, spp)

`my_accessions`	A data frame with accession protein ids and organisms
`spp`	A string with the scientific name of the species or organism.

A string vector with protein accession (XP accession, RefSeq database)

Jose V. Die

getAccessions to create the data frame with accession id and organism for each protein identifier.

my_prots = data.frame(accession = c("XP_014620925", "XP_003546066", 
   "XP_025640041", "XP_019453956", "XP_006584791", "XP_020212415", 
   "XP_017436622", "XP_004503803", "XP_019463844"),
   organism =  c("Glycine max", "Glycine max", "Arachis hypogaea",
   "Lupinus angustifolius", "Glycine max", "Cajanus cajan", 
   "Vigna angularis", "Cicer arietinum", "Lupinus angustifolius"))
   
accessions_from_spp(my_prots, "Glycine max")