Description Usage Arguments Value Author(s) See Also Examples
View source: R/accessions_from_spp.R
Filter a dataframe of protein ids and return the accessions for a given species or organism.
1 | accessions_from_spp(my_accessions, spp)
|
my_accessions |
A data frame with accession protein ids and organisms |
spp |
A string with the scientific name of the species or organism. |
A string vector with protein accession (XP accession, RefSeq database)
Jose V. Die
getAccessions
to create the data frame with accession
id and organism for each protein identifier.
1 2 3 4 5 6 7 8 9 | my_prots = data.frame(accession = c("XP_014620925", "XP_003546066",
"XP_025640041", "XP_019453956", "XP_006584791", "XP_020212415",
"XP_017436622", "XP_004503803", "XP_019463844"),
organism = c("Glycine max", "Glycine max", "Arachis hypogaea",
"Lupinus angustifolius", "Glycine max", "Cajanus cajan",
"Vigna angularis", "Cicer arietinum", "Lupinus angustifolius"))
accessions_from_spp(my_prots, "Glycine max")
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