getProteins_from_tax_ids: Get the RefSeq protein identifiers for the given taxonomic...
In geneHummus: A Pipeline to Define Gene Families in Legumes and Beyond

Parse the RefSeq database using protein architecture identifiers (SPARCLE dabatse) and extract the protein ids. for the selected taxonomic species.

1	getProteins_from_tax_ids(arch_ids, taxonIds)

`arch_ids`	A string with the electronic links for the SPARCLE.
`taxonIds`	A vector string with taxonomy ids; Legume species available in RefSeq, by default.

RefSeq protein identifiers for selected species.

Jose V. Die

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filtered_archids <- c("12034184")
medicago <- c(3880)
getProteins_from_tax_ids(filtered_archids, medicago)

geneHummus documentation built on May 2, 2019, 6:19 a.m.

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