Man pages for geneHummus
A Pipeline to Define Gene Families in Legumes and Beyond

accessions_by_sppCompute the total number of accession proteins per species
accessions_from_sppExtract the accession ids (XP accession) for a given organism
accessions_warningGet acessions and organism for each protein identifier
archids_warningGet architecture identifiers for the conserved domains
extract_proteinsGet the protein identifiers
filterArch_idsFilter the protein architectures based on conserved domains
filterarchids_warningFilter protein architectures based on conserved domains
geneHummusgenehummus: A pipeline to define gene families in Legumes and...
getAccessionsGet the acessions ids and the organism for each protein...
getArch_idsGet the potential architecture identifiers for the conserved...
getArch_labelsGet the description label for a protein architecture...
getProteins_from_tax_idsGet the RefSeq protein identifiers for the given taxonomic...
getProtlinksGet the protein identifiers for a given architecture
getSparcleArchsGet the electronic architecture for a conserved domain
get_sppGet the species name from the description sequence
labels_warningGet description label for a protein architecture identifier
legumesIdsNCBI taxonomy ids for the legume family
my_legumesARF proteins per legume specie
proteins_warningGet RefSeq protein identifiers for the given taxonomic...
sizeIdsBuild a list containing N elements per element list
geneHummus documentation built on April 5, 2019, 1:05 a.m.