Man pages for geneHummus
A Pipeline to Define Gene Families in Legumes and Beyond
| accessions_by_spp | Compute the total number of accession proteins per species |
| accessions_from_spp | Extract the accession ids (XP accession) for a given organism |
| accessions_warning | Get acessions and organism for each protein identifier |
| archids_warning | Get architecture identifiers for the conserved domains |
| extract_proteins | Get the protein identifiers |
| filterArch_ids | Filter the protein architectures based on conserved domains |
| filterarchids_warning | Filter protein architectures based on conserved domains |
| geneHummus | genehummus: A pipeline to define gene families in Legumes and... |
| getAccessions | Get the acessions ids and the organism for each protein... |
| getArch_ids | Get the potential architecture identifiers for the conserved... |
| getArch_labels | Get the description label for a protein architecture... |
| getProteins_from_tax_ids | Get the RefSeq protein identifiers for the given taxonomic... |
| getProtlinks | Get the protein identifiers for a given architecture |
| getSparcleArchs | Get the electronic architecture for a conserved domain |
| get_spp | Get the species name from the description sequence |
| labels_warning | Get description label for a protein architecture identifier |
| legumesIds | NCBI taxonomy ids for the legume family |
| my_legumes | ARF proteins per legume specie |
| proteins_warning | Get RefSeq protein identifiers for the given taxonomic... |
| sizeIds | Build a list containing N elements per element list |
