genotypeR: SNP Genotype Marker Design and Analysis

We implement a common genotyping workflow with a standardized software interface. 'genotypeR' designs genotyping markers from vcf files, outputs markers for multiplexing suitability on various platforms (Sequenom and Illumina GoldenGate), and provides various QA/QC and analysis functions. We developed this package to analyze data in Stevison LS, SA Sefick, CA Rushton, and RM Graze. Accepted. Invited Review: Recombination rate plasticity: revealing mechanisms by design. Philosophical Transactions Royal Society London B Biol Sci. .

Package details

AuthorStephen Alfred Sefick [aut, cre], Magdelena A Castronova [aut], Laurie S Stevison [aut]
Date of publication2017-08-23 20:55:52 UTC
MaintainerStephen Alfred Sefick <[email protected]>
LicenseGPL (>= 3)
Package repositoryView on CRAN
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genotypeR documentation built on Aug. 24, 2017, 1:03 a.m.