Description Usage Arguments Slots
Class genotypeR
Defines a class and data structure for working with genotyping data.
Generic genotypes.
Method impossible_genotype.
Method binary_genotypes.
Method counted_crossovers.
Method binary_genotypes<-.
Method genotypes<-.
Method counted_crossovers<-.
Method show.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 | genotypes(object, ...)
## S4 method for signature 'genotypeR'
genotypes(object)
impossible_genotype(object, ...)
## S4 method for signature 'genotypeR'
impossible_genotype(object)
binary_genotypes(object, ...)
## S4 method for signature 'genotypeR'
binary_genotypes(object)
counted_crossovers(object, ...)
## S4 method for signature 'genotypeR'
counted_crossovers(object)
binary_genotypes(object) <- value
## S4 replacement method for signature 'genotypeR'
binary_genotypes(object) <- value
genotypes(object) <- value
## S4 replacement method for signature 'genotypeR'
genotypes(object) <- value
counted_crossovers(object) <- value
## S4 replacement method for signature 'genotypeR'
counted_crossovers(object) <- value
show(object, value)
## S4 method for signature 'genotypeR'
show(object, value)
|
object |
is a genotypeR object |
... |
is ... |
value |
is a value |
genotypes
is a data frame of genotypes
impossible_genotype
is a vector with Ref/Alt that is the impossible genotype in a back cross design
binary_genotypes
is a data frame of numeric coded genotypes
counted_crossovers
is a data frame of counted crossovers
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