Description Usage Arguments Value Examples
read_in_sequenom_data
reads in a csv file produced from
the Sequenom platform (i.e., sequenom excel output saved as a csv).
This function is a wrapper function around read.csv in order to read genotype data from the Sequenom Platform, and provide data compatible with the genotypeR package.
1 | read_in_sequenom_data(x, sort_char = "chr|contig", ...)
|
x |
This is a csv formatted Genotypes tab of exported sequenom data that you would like to read in. |
sort_char |
is the character string output by the PERL pipeline in the marker design phase (i.e., chr 1000 1050 AAA[A/T]GTC; the chr is the sort_char. Defaults to chr or contig. |
... |
Other arguments passed to the function |
A data frame suited for the genotypeR package
1 2 3 | sequenom_file <- system.file("extdata/sequenom_test_data.csv", package = "genotypeR")
sequenom_data <- read_in_sequenom_data(sequenom_file)
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