Files in genotypeR
SNP Genotype Marker Design and Analysis

README.md
NAMESPACE
MD5
DESCRIPTION
R/illumina_Genotype_Table.R R/S4.R R/sort_sequenom_df.R R/make_marker_names.R R/read_in_illumina_GoldenGate.R R/read_Master_SNPs_Data.R R/Heterogametic_Genotype_Warnings.R R/genotypes_data.R R/Ref_Alt_Table.R R/subsetChromosome.R R/GoldenGate2iCOM_design.R R/grep_df_subset.R R/initialize_genotypeR_data.R R/binary_coding.R R/SequenomMarkers_v3.R R/convert2qtl_table.R R/read_in_sequenom_data.R R/CO.R R/markers.R R/zero_one_two_coding.R R/count_CO.R
inst/get_SequenomMarkers_and_remove_git.sh
inst/CITATION
inst/doc/genotypeR.Rmd
inst/doc/genotypeR.html
inst/doc/genotypeR.R inst/SequenomMarkers/SequenomMarkers_Rscript_example.R
inst/SequenomMarkers/Grandmaster_SNPs.pl
inst/SequenomMarkers/R_Pipeline_Rapper.sh
inst/SequenomMarkers/FS16_test.vcf
inst/SequenomMarkers/Finding_SNPs_GoldenGate.pl
inst/SequenomMarkers/Pipeline_Rapper.sh
inst/SequenomMarkers/Grandmaster_new.pl
inst/SequenomMarkers/FS14_test.vcf
inst/SequenomMarkers/README.md
inst/SequenomMarkers/Finding_SNPs_new.pl
inst/SequenomMarkers/Finding_SNPs_Sequenom.pl
inst/extdata/filtered_markers.txt
inst/extdata/sequenom_test_data.csv
inst/SequenomMarkers_v2/README.md
inst/SequenomMarkers_v2/pop_sample/Pipeline_rapper_pop_sample.sh
inst/SequenomMarkers_v2/pop_sample/R_Pipeline_rapper_pop_sample.sh
inst/SequenomMarkers_v2/pop_sample/Grandmaster_SNPs_pop_sample.pl
inst/SequenomMarkers_v2/pop_sample/Finding_SNPs_pop_sample.pl
inst/SequenomMarkers_v2/pop_sample/test_files/Sample1.vcf
inst/SequenomMarkers_v2/pop_sample/test_files/Sample2.vcf
inst/SequenomMarkers_v2/two_sample/Grandmaster_SNPs_two_sample.pl
inst/SequenomMarkers_v2/two_sample/Pipeline_rapper_two_sample.sh
inst/SequenomMarkers_v2/two_sample/sort_by_chr.sh
inst/SequenomMarkers_v2/two_sample/R_Pipeline_rapper_two_sample.sh
inst/SequenomMarkers_v2/two_sample/Finding_SNPs_two_sample.pl
inst/SequenomMarkers_v2/two_sample/test_files/Sample2.vcf
inst/SequenomMarkers_v2/two_sample/test_files/Sample1_v_Sample2.out.diff.sites_in_files
inst/SequenomMarkers_v2/two_sample/test_files/Sample1.vcf
data/markers.rda
data/genotypes_data.rda
man/sort_sequenom_df.Rd man/Heterogametic_Genotype_Warnings.Rd man/binary_coding.Rd man/CO.Rd man/SequenomMarkers.Rd man/zero_one_two_coding.Rd man/count_CO.Rd man/subsetChromosome.Rd man/convert2qtl_table.Rd man/read_in_illumina_GoldenGate.Rd man/illumina_Genotype_Table.Rd man/make_marker_names.Rd man/genotypeR-class.Rd man/read_in_sequenom_data.Rd man/grep_df_subset.Rd man/genotypes_data.Rd man/markers.Rd man/initialize_genotypeR_data.Rd man/GoldenGate2iCOM_design.Rd man/read_in_Master_SNPs_data.Rd man/Ref_Alt_Table.Rd tests/testthat.R tests/testthat/test-7_sort_sequenom_df.R tests/testthat/test-5_Heterogametic_Genotype_Warnings.R tests/testthat/test-4_count_CO.R tests/testthat/test-1_binary_multi_coding.R tests/testthat/test_data_generator.R tests/testthat/test-2_subsetChromosome.R tests/testthat/test-3_CO.R tests/testthat/test-6_initialize_genotypeR_data.R
build/vignette.rds
vignettes/genotypeR[exported].pdf vignettes/genotypeR.Rmd
genotypeR documentation built on Aug. 24, 2017, 1:03 a.m.