read_in_illumina_GoldenGate: Read in Illumina GoldenGate AB tab delimited text file

Description Usage Arguments Value Examples

Description

read_in_illumina_GoldenGate reads in a tab delimited output file from illumina GoldenGate SNP genotyping platform for use in genotypeR.

Usage

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read_in_illumina_GoldenGate(tab_delimited_file, chromosome,
  flanking_region_length)

Arguments

tab_delimited_file

is a tab delimited AB illumina GoldenGate file

chromosome

is a vector of chromosome names

flanking_region_length

is the length in bp of the flanking region of the SNP

Value

data frame useful used in genotypeR

Examples

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## Not run: 
test_data <- read_in_illumina_GoldenGate(tab_delimited_file= \
"path_to_golden_gate_file", flanking_region_length=50,  \
chromosome=rep("chr2", length.out=length(552960)))

## End(Not run)

genotypeR documentation built on May 2, 2019, 8:25 a.m.