Description Usage Arguments Value Examples
make_marker_names
makes genotypeR compliant names. This
is used for input into SNP assay design software. The output is
also used in Ref_Alt_Table
.
1 |
x |
Output of read_in_Master_SNPs_data |
A data frame of GrandMasterSNPs markers with correct marker names
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | data(markers)
markers <- make_marker_names(markers)
## Not run:
##example
GrandMasterSNPs_markers <- read_in_Master_SNPs_data("GrandMasterSNPs_output")
marker_names_GrandMasterSNPs_markers <- make_marker_names(GrandMasterSNPs_markers)
If subset of markers needed
use the sequenom output to subset the overall marker set from
GrandMasterSNPs output
seq_test_data <- read_in_sequenom_data("path_to_sequenom_data")
col_seq_data <- colnames(seq_test_data)
col_markers <- test_data_marker_names$marker_names
markerinstudy <- test_data_marker_names[col_markers%in%col_seq_data,]
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.