Files in gimap

Calculate Genetic Interactions for Paired CRISPR Targets

NEWS.md README.md R/04-normalize.R R/05-calculate_gi.R R/03-annotate.R R/00-setup_data.R R/plots-gi.R R/02-gimap_filter.R R/01-qc.R R/plots-norm.R R/plots-qc.R R/utils.R inst/example_qc_report.Rmd inst/doc/quick-start.Rmd inst/doc/treatment_example.Rmd inst/doc/timepoint-example.R inst/doc/timepoint-example.Rmd inst/doc/treatment_example.R inst/doc/quick-start.R inst/extdata/gimapQCTemplate.Rmd tests/testthat.R tests/testthat/test-annotate.R tests/testthat/test-normalize.R tests/testthat/test-figshare.R tests/testthat/test-gi-calc.R tests/testthat/test-setup_data.R tests/testthat/test-run_qc.R vignettes/quick-start.Rmd vignettes/treatment_example.Rmd vignettes/timepoint-example.Rmd man/ctrl_genes.Rd man/get_example_data.Rd man/plot_targets.Rd man/plot_volcano.Rd man/gimap_normalize.Rd man/tpm_setup.Rd man/delete_annotation.Rd man/qc_cor_heatmap.Rd man/qc_variance_hist.Rd man/qc_filter_plasmid.Rd man/example_data_folder.Rd man/qc_cdf.Rd man/supported_cell_lines.Rd man/gimap_stats.Rd man/save_example_data_treatment.Rd man/delete_example_data.Rd man/plot_exp_v_obs_scatter.Rd man/plot_crispr.Rd man/key_encrypt_creds_path.Rd man/run_qc.Rd man/gimap_object.Rd man/plot_theme.Rd man/qc_plasmid_histogram.Rd man/encrypt_creds_path.Rd man/plot_rank_scatter.Rd man/setup_data.Rd man/gimap_filter.Rd man/save_example_data_timepoint.Rd man/pipe.Rd man/qc_constructs_countzero_bar.Rd man/cn_setup.Rd man/qc_sample_hist.Rd man/get_figshare.Rd man/gimap_annotate.Rd man/qc_filter_zerocounts.Rd man/calc_gi.Rd