Nothing
skip_on_cran()
skip_if_not(broom.helpers::.assert_package("huxtable", pkg_search = "gtsummary", boolean = TRUE))
test_that("tbl_summary", {
expect_error(tbl <- tbl_summary(trial) %>% as_hux_table(), NA)
expect_warning(tbl_summary(trial) %>% as_hux_table(), NA)
expect_snapshot(tbl)
expect_error(
tbl <-
tbl_summary(trial[c("trt", "age")]) %>%
modify_table_styling(columns = label, footnote = "test footnote", rows = variable == "age") %>%
as_hux_table(),
NA
)
expect_snapshot(tbl)
# confirming the header prints the N correctly
expect_error(
tbl <-
rep_len(list(trial[c("age", "trt")]), 25) %>%
bind_rows() %>%
tbl_summary() %>%
as_hux_table(),
NA
)
expect_snapshot(tbl)
})
test_that("tbl_summary", {
expect_error(tbl_summary(trial) %>% as_hux_table(return_calls = TRUE), NA)
expect_warning(tbl_summary(trial) %>% as_hux_table(return_calls = TRUE), NA)
})
test_that("tbl_cross", {
expect_error(tbl <- trial %>% tbl_cross(trt, grade) %>% as_hux_table(), NA)
expect_warning(lm(marker ~ age, trial) %>% tbl_regression() %>% as_hux_table(), NA)
expect_snapshot(tbl)
})
test_that("tbl_regression", {
expect_error(tbl <- lm(marker ~ age, trial) %>% tbl_regression() %>% as_hux_table(), NA)
expect_warning(lm(marker ~ age, trial) %>% tbl_regression() %>% as_hux_table(), NA)
expect_snapshot(tbl)
})
test_that("tbl_uvregression", {
expect_error(tbl <- trial %>% tbl_uvregression(method = lm, y = age) %>% as_hux_table(), NA)
expect_warning(trial %>% tbl_uvregression(method = lm, y = age) %>% as_hux_table(), NA)
expect_snapshot(tbl)
})
test_that("tbl_survfit", {
skip_if_not(broom.helpers::.assert_package("survival", pkg_search = "gtsummary", boolean = TRUE))
fit1 <- survival::survfit(survival::Surv(ttdeath, death) ~ trt, trial)
expect_error(tbl <- tbl_survfit(fit1, times = c(12, 24), label_header = "{time} Months") %>% as_hux_table(), NA)
expect_warning(tbl_survfit(fit1, times = c(12, 24), label_header = "{time} Months") %>% as_hux_table(), NA)
expect_snapshot(tbl)
})
test_that("tbl_merge/tbl_stack", {
skip_if_not(broom.helpers::.assert_package("survival", pkg_search = "gtsummary", boolean = TRUE))
t1 <-
glm(response ~ trt + grade + age, trial, family = binomial) %>%
tbl_regression(exponentiate = TRUE)
t2 <-
survival::coxph(survival::Surv(ttdeath, death) ~ trt + grade + age, trial) %>%
tbl_regression(exponentiate = TRUE)
tbl_merge_ex1 <-
tbl_merge(
tbls = list(t1, t2),
tab_spanner = c("**Tumor Response**", "**Time to Death**")
)
expect_error(tbl <- as_hux_table(tbl_merge_ex1), NA)
expect_warning(as_hux_table(tbl_merge_ex1), NA)
expect_snapshot(tbl)
tbl_stack_ex1 <-
tbl_stack(
tbls = list(t1, t2),
group_header = c("**Tumor Response**", "**Time to Death**")
)
expect_error(tbl <- as_hux_table(tbl_stack_ex1), NA)
expect_warning(as_hux_table(tbl_stack_ex1), NA)
expect_snapshot(tbl)
})
test_that("indent2", {
expect_error(
trial %>%
select(age) %>%
tbl_summary() %>%
modify_table_styling(
columns = label,
rows = variable == "age" & row_type != "label",
text_format = "indent2"
) %>%
as_hux_table(),
NA
)
})
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