Nothing
skip_on_cran()
skip_if_not(broom.helpers::.assert_package("kableExtra", pkg_search = "gtsummary", boolean = TRUE))
test_that("tbl_summary", {
expect_error(tbl <- tbl_summary(trial) %>% as_kable_extra(format = "latex"), NA)
expect_warning(tbl_summary(trial) %>% as_kable_extra(), NA)
expect_snapshot(tbl)
expect_error(
tbl <-
tbl_summary(trial[c("trt", "age")]) %>%
modify_table_styling(columns = label, footnote = "test footnote", rows = variable == "age") %>%
as_kable_extra(format = "latex"),
NA
)
expect_snapshot(tbl)
})
test_that("tbl_summary", {
expect_error(tbl_summary(trial) %>% as_kable_extra(return_calls = TRUE), NA)
expect_warning(tbl_summary(trial) %>% as_kable_extra(return_calls = TRUE), NA)
})
test_that("tbl_cross", {
expect_error(tbl <- tbl_cross(trial, trt, grade) %>% as_kable_extra(format = "latex"), NA)
expect_snapshot(tbl)
})
test_that("tbl_regression", {
expect_error(tbl <- lm(marker ~ age, trial) %>% tbl_regression() %>% as_kable_extra(format = "latex"), NA)
expect_warning(lm(marker ~ age, trial) %>% tbl_regression() %>% as_kable_extra(), NA)
expect_snapshot(tbl)
})
test_that("tbl_uvregression", {
expect_error(tbl <- trial %>% tbl_uvregression(method = lm, y = age) %>% as_kable_extra(format = "latex"), NA)
expect_warning(trial %>% tbl_uvregression(method = lm, y = age) %>% as_kable_extra(), NA)
expect_snapshot(tbl)
})
test_that("tbl_survfit", {
skip_if_not(broom.helpers::.assert_package("survival", pkg_search = "gtsummary", boolean = TRUE))
fit1 <- survival::survfit(survival::Surv(ttdeath, death) ~ trt, trial)
expect_error(tbl <- tbl_survfit(fit1, times = c(12, 24), label_header = "{time} Months") %>% as_kable_extra(format = "latex"), NA)
expect_warning(tbl_survfit(fit1, times = c(12, 24), label_header = "{time} Months") %>% as_kable_extra(), NA)
expect_snapshot(tbl)
})
test_that("tbl_merge/tbl_stack", {
skip_if_not(broom.helpers::.assert_package("survival", pkg_search = "gtsummary", boolean = TRUE))
t1 <-
glm(response ~ trt + grade + age, trial, family = binomial) %>%
tbl_regression(exponentiate = TRUE)
t2 <-
survival::coxph(survival::Surv(ttdeath, death) ~ trt + grade + age, trial) %>%
tbl_regression(exponentiate = TRUE)
tbl_merge_ex1 <-
tbl_merge(
tbls = list(t1, t2),
tab_spanner = c("**Tumor Response**", "**Time to Death**")
)
tbl_stack_ex1 <-
tbl_stack(
tbls = list(t1, t2),
group_header = c("**Tumor Response**", "**Time to Death**")
)
expect_error(tbl <- tbl_merge_ex1 %>% as_kable_extra(format = "latex"), NA)
expect_warning(tbl_merge_ex1 %>% as_kable_extra(), NA)
expect_snapshot(tbl)
expect_error(tbl <- tbl_stack_ex1 %>% as_kable_extra(format = "latex"), NA)
expect_warning(tbl_stack_ex1 %>% as_kable_extra(), NA)
expect_snapshot(tbl)
expect_error(tbl <- tbl_stack_ex1 %>% as_kable_extra(format = "latex"), NA)
expect_warning(tbl_stack_ex1 %>% as_kable_extra(format = "latex"), NA)
expect_snapshot(tbl)
expect_error(tbl <- tbl_stack_ex1 %>% bold_labels() %>% as_kable_extra(escape = TRUE, format = "latex"), NA)
expect_warning(tbl_stack_ex1 %>% bold_labels() %>% as_kable_extra(escape = TRUE, format = "latex"), NA)
expect_snapshot(tbl)
expect_error(tbl <- tbl_stack_ex1 %>% as_kable_extra(escape = TRUE, format = "latex"), NA)
expect_warning(tbl_stack_ex1 %>% as_kable_extra(escape = TRUE, format = "latex"), NA)
expect_snapshot(tbl)
expect_error(tbl <- tbl_stack_ex1 %>% as_kable_extra(format = "html"), NA)
expect_warning(tbl_stack_ex1 %>% as_kable_extra(format = "html"), NA)
expect_snapshot(tbl)
expect_error(tbl <- tbl_stack_ex1 %>% bold_labels() %>% as_kable_extra(escape = TRUE, format = "html"), NA)
expect_warning(tbl_stack_ex1 %>% bold_labels() %>% as_kable_extra(escape = TRUE, format = "html"), NA)
expect_snapshot(tbl)
})
test_that("indent2", {
expect_error(
tbl <-
trial %>%
select(age) %>%
tbl_summary() %>%
modify_table_styling(
columns = label,
rows = variable == "age" & row_type != "label",
text_format = "indent2"
) %>%
as_kable_extra(format = "latex"),
NA
)
expect_snapshot(tbl)
})
test_that("latex-column-alignment", {
t1 <- trial %>%
select(trt, age) %>%
tbl_summary(
by = trt
)
t2 <- trial %>%
select(trt, grade) %>%
tbl_summary(
by = trt
)
tstack <- tbl_stack(list(t1, t2)) %>%
modify_header(
all_stat_cols() ~ "**{level}**\nN = {n}"
) %>%
as_kable_extra(format = "latex")
expect_snapshot(tstack)
})
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.