parse.snps: Parse text representation of a SNP embedded in flanking...
In gtx: Genetics ToolboX
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Extracts the first occurence of a pattern like [A/T], along with the
5' and 3' flanking sequences.
Usage
1
parse.snps(seqs, seqnames = NULL)
Arguments
seqs
a (vector of) sequences.
seqnames
optional names.
Value
A data frame with seven columns, called seq5p, len5p, poly, alleleA,
alleleB, seq3p, and len3p.
Author(s)
Toby Johnson Toby.x.Johnson@gsk.com
Examples
1
2
data(snps.BRCA1)
parse.snps(snps.BRCA1$SourceSeq[1:10])
gtx documentation built on May 2, 2019, 5:08 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Extracts the first occurence of a pattern like [A/T], along with the 5' and 3' flanking sequences.
Usage
1 | parse.snps(seqs, seqnames = NULL)
|
Arguments
seqs |
a (vector of) sequences. |
seqnames |
optional names. |
Value
A data frame with seven columns, called seq5p, len5p, poly, alleleA, alleleB, seq3p, and len3p.
Author(s)
Toby Johnson Toby.x.Johnson@gsk.com
Examples
1 2 | data(snps.BRCA1)
parse.snps(snps.BRCA1$SourceSeq[1:10])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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