API for hahmmr
Haplotype-Aware Hidden Markov Model for RNA
| Global functions | |
|---|---|
| acen_hg19 | Man page |
| acen_hg38 | Man page |
| analyze_allele | Man page |
| analyze_joint | Man page |
| annot_cm | Man page Source code |
| annot_segs | Man page |
| approx_phi_post | Man page |
| approx_theta_post_s2 | Man page |
| approx_theta_post_s3 | Man page |
| bulk_example | Man page |
| calc_allele_LLR | Man page |
| calc_allele_lik_s2 | Man page |
| calc_allele_lik_s3 | Man page Source code |
| calc_exp_LLR | Man page |
| calc_trans_mat_s15 | Man page |
| calc_trans_mat_s7 | Man page Source code |
| check_cols | Man page |
| check_matrix | Man page Source code |
| chrom_sizes_hg19 | Man page |
| chrom_sizes_hg38 | Man page |
| classify_alleles | Man page |
| combine_bulk | Man page |
| cpp_dgpois | Source code |
| cppdbbinom | Source code |
| dbbinom | Man page Source code |
| df_allele_example | Man page |
| dpoilog | Man page Source code |
| filter_genes | Man page Source code |
| fit_gamma | Man page |
| fit_lnpois_cpp | Man page Source code |
| fit_ref_sse | Man page Source code |
| forward_back_allele | Man page Source code |
| forward_backward_compute | Source code |
| gaps_hg19 | Man page |
| gaps_hg38 | Man page |
| gene_counts_example | Man page |
| generate_postfix | Man page |
| get_allele_bulk | Man page Source code |
| get_allele_hmm_s2 | Man page Source code |
| get_allele_hmm_s3 | Man page Source code |
| get_bulk | Man page Source code |
| get_exp_bulk | Man page Source code |
| get_trans_probs_s15 | Man page |
| get_trans_probs_s7 | Man page Source code |
| gtf_hg19 | Man page |
| gtf_hg38 | Man page |
| gtf_mm10 | Man page |
| l_bbinom | Man page Source code |
| l_lnpois | Man page Source code |
| l_lnpois_cpp | Source code |
| likelihood_allele | Man page Source code |
| likelihood_compute | Source code |
| logSumExp | Man page Source code |
| plot_bulks | Man page Source code |
| plot_psbulk | Man page Source code |
| poilog1 | Source code |
| pre_likelihood_hmm | Man page |
| ref_hca | Man page |
| ref_hca_counts | Man page |
| roman2int_internal | Source code |
| run_allele_hmm_s3 | Man page Source code |
| run_allele_hmm_s5 | Man page Source code |
| run_joint_hmm_s15 | Man page Source code |
| run_joint_hmm_s7 | Man page Source code |
| segs_example | Man page |
| smooth_segs | Man page |
| switch_prob_cm | Man page Source code |
| theta_hat_seg | Man page |
| vcf_meta | Man page |
| viterbi_allele | Man page Source code |
| viterbi_compute | Source code |
| viterbi_joint | Man page Source code |
| viterbi_joint_mat | Man page |
