API for humarray
Simplify Analysis and Annotation of Human Microarray Datasets
| Global functions | |
|---|---|
| .makeNakedMatFromChipInfo | Man page |
| .rownames3 | Man page |
| .updateAllele | Man page |
| A1 | Man page |
| A1,ChipInfo-method | Man page |
| A1<- | Man page |
| A1<-,ChipInfo-method | Man page |
| A2 | Man page |
| A2,ChipInfo-method | Man page |
| A2<- | Man page |
| A2<-,ChipInfo-method | Man page |
| AB | Man page Source code |
| Band | Man page Source code |
| Band.gene | Man page Source code |
| Band.pos | Man page Source code |
| ChipInfo | Man page Source code |
| ChipInfo-class | Man page |
| ChipInfo-method | Man page |
| Chr | Man page Source code |
| Cor | Man page Source code |
| ENS.to.GENE | Man page Source code |
| GENE.to.ENS | Man page Source code |
| GRanges | Man page |
| GRanges-method | Man page |
| Gene.pos | Man page Source code |
| ImmunoChipB37 | Man page |
| Pos | Man page Source code |
| Pos.band | Man page Source code |
| Pos.gene | Man page Source code |
| QCcode | Man page |
| QCcode,ChipInfo-method | Man page |
| QCcode<- | Man page |
| QCcode<-,ChipInfo-method | Man page |
| QCfail | Man page |
| QCfail,ChipInfo-method | Man page |
| QCpass | Man page |
| QCpass,ChipInfo-method | Man page |
| RangedData | Man page |
| RangedData-method | Man page |
| TGOGR | Man page Source code |
| TGORD | Man page Source code |
| [[,ChipInfo,ANY,ANY-method | Man page |
| add.trail | Man page Source code |
| as | Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page |
| chip | Man page |
| chip,ChipInfo-method | Man page |
| chip.support | Man page Source code |
| chipId | Man page |
| chipId,ChipInfo-method | Man page |
| chr2 | Man page Source code |
| chrGS | Man page Source code |
| chrIndices,RangedData-method | Man page |
| chrIndices2 | Man page Source code |
| chrIndicesGS | Man page Source code |
| chrInfo,RangedData-method | Man page |
| chrInfo2 | Man page Source code |
| chrInfoGS | Man page Source code |
| chrNames,RangedData-method | Man page |
| chrNames2 | Man page Source code |
| chrNums | Man page Source code |
| chrOrder2 | Man page Source code |
| chrPartitioning2 | Man page Source code |
| chrSel | Man page |
| chrSel,ChipInfo-method | Man page |
| chrSel,GRanges-method | Man page |
| chrSel,RangedData-method | Man page |
| chrSelect | Man page Source code |
| chrm | Man page |
| chrm,ChipInfo-method | Man page |
| chrm,GRanges-method | Man page |
| chrm,RangedData-method | Man page |
| chrnames.to.num | Man page Source code |
| chrnums.to.txt | Man page Source code |
| clean.snp.ids | Man page Source code |
| comma | Man page Source code |
| compact.gene.list | Man page Source code |
| conv.36.37 | Man page Source code |
| conv.37.36 | Man page Source code |
| conv.37.38 | Man page Source code |
| conv.38.37 | Man page Source code |
| convTo36 | Man page Man page |
| convTo36,ChipInfo-method | Man page |
| convTo37 | Man page Man page |
| convTo37,ChipInfo-method | Man page |
| convTo38 | Man page Man page |
| convTo38,ChipInfo-method | Man page |
| convert.textpos.to.data | Man page Source code |
| df.to.GRanges | Man page Source code |
| df.to.ranged | Man page Source code |
| dim,ChipInfo-method | Man page |
| do.cw | Man page |
| egSymb | Man page |
| emd.rmv | Man page Source code |
| endSnp | Man page Source code |
| expand.nsnp | Man page Source code |
| extraColumnSlotNames2 | Man page |
| extraColumnSlotNames2,ANY-method | Man page |
| extraColumnSlots2 | Man page Source code |
| finitize | Man page Source code |
| force.chr.pos | Man page Source code |
| gene.duplicate.report | Man page Source code |
| get.GO.for.genes | Man page Source code |
| get.centromere.locs | Man page Source code |
| get.chr.lens | Man page Source code |
| get.cyto | Man page Source code |
| get.exon.annot | Man page Source code |
| get.gene.annot | Man page Source code |
| get.genic.subset | Man page Source code |
| get.immunobase.snps | Man page Source code |
| get.immunog.locs | Man page Source code |
| get.nearby.snp.lists | Man page Source code |
| get.recombination.map | Man page Source code |
| get.t1d.regions | Man page Source code |
| get.t1d.subset | Man page Source code |
| get.telomere.locs | Man page Source code |
| hard.coded.conv | Man page Source code |
| hg18ToHg19 | Man page |
| hg19ToHg18 | Man page |
| hg19ToHg38 | Man page |
| hg38ToHg19 | Man page |
| humarray | Man page |
| humarray-package | Man page |
| iChipRegionsB36 | Man page |
| id.to.rs | Man page Source code |
| ids.by.pos | Man page Source code |
| immunobase.has.changed | Man page Source code |
| in.window | Man page Source code |
| initialize,ChipInfo-method | Man page |
| invGRanges | Man page Source code |
| l10 | Man page Source code |
| lambda_1000 | Man page Source code |
| length,ChipInfo-method | Man page |
| make.divisor | Man page Source code |
| makeGRanges | Man page Source code |
| makeNakedMatFromChipInfo | Source code |
| makePrettyMatrixForCompactPrinting2 | Man page Source code |
| manifest | Man page Source code |
| maxna | Man page Source code |
| meanna | Man page Source code |
| medianna | Man page Source code |
| meta.me | Man page Source code |
| minna | Man page Source code |
| nearest.gene | Man page Source code |
| nearest.snp | Man page Source code |
| onAttach | Source code |
| onLoad | Source code |
| order.chr | Man page Source code |
| pduplicated | Man page Source code |
| plot,GRanges,ANY-method | Man page |
| plot,RangedData,ANY-method | Man page |
| plotGeneAnnot | Man page Source code |
| plotRanges | Man page Source code |
| plot_get_area | Man page Source code |
| plotdf | Man page Source code |
| print,ChipInfo-method | Man page |
| pt2 | Man page Source code |
| rangeSnp | Man page Source code |
| ranged.to.data.frame | Man page Source code |
| ranged.to.txt | Man page Source code |
| recomWindow | Man page Source code |
| rmv.trail | Man page Source code |
| rownames,ChipInfo-method | Man page |
| rownames,GRanges-method | Man page |
| rownames3 | Source code |
| rownames<-,GRanges-method | Man page |
| rranges | Man page Source code |
| rs.id | Man page |
| rs.id,ChipInfo-method | Man page |
| rs.to.id | Man page Source code |
| rsampid | Man page Source code |
| rsnpid | Man page Source code |
| sdna | Man page Source code |
| select.autosomes | Man page Source code |
| set.chr.to.char | Man page Source code |
| set.chr.to.numeric | Man page Source code |
| show,ChipInfo-method | Man page |
| showChipInfo | Man page Source code |
| snps.in.range | Man page Source code |
| sort_chr | Man page Source code |
| sortna | Man page Source code |
| startSnp | Man page Source code |
| substitute.36s | Man page Source code |
| sumna | Man page Source code |
| tidy.extra.chr | Man page Source code |
| toGenomeOrder2 | Man page Source code |
| ucsc | Man page |
| ucsc,ChipInfo-method | Man page |
| ucsc.sanitizer | Man page Source code |
| updateAllele | Source code |
| validate.dir.for | Man page Source code |
