MLH: Calculate multilocus heterozygosity (MLH)

In inbreedR: Analysing Inbreeding Based on Genetic Markers

Description

MLH is defined as the total number of heterozygous loci in an individual divided by the number of loci typed in the focal individual. An MLH of 0.5 thus means that 50 percent of an indiviudals loci are heterozygous.

Usage

MLH(genotypes)

Arguments

genotypes

data.frame with individuals in rows and loci in columns, containing genotypes coded as 0 (homozygote), 1 (heterozygote) and NA (missing)

Value

Vector of individual multilocus heterozygosities

Author(s)

Martin A. Stoffel ([e-mail])

References

Coltman, D. W., Pilkington, J. G., Smith, J. A., & Pemberton, J. M. (1999). Parasite-mediated selection against inbred Soay sheep in a free-living, island population. Evolution, 1259-1267.

Examples

data(mouse_msats)
genotypes <- convert_raw(mouse_msats)
het <- MLH(genotypes)

inbreedR documentation built on Feb. 2, 2022, 5:09 p.m.