sMLH: Calculate multilocus heterozygosity (MLH)
In inbreedR: Analysing Inbreeding Based on Genetic Markers
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
sMLH is defined as the total number of heterozygous loci in an individual divided
by the sum of average observed heterozygosities in the population over the
subset of loci successfully typed in the focal individual.
Usage
1
sMLH(genotypes)
Arguments
genotypes
data.frame with individuals in rows and loci in columns,
containing genotypes coded as 0 (homozygote), 1 (heterozygote) and NA (missing)
Value
Vector of individual standardized multilocus heterozygosities
Author(s)
Martin A. Stoffel (martin.adam.stoffel@gmail.com)
References
Coltman, D. W., Pilkington, J. G., Smith, J. A., & Pemberton, J. M. (1999).
Parasite-mediated selection against inbred Soay sheep in a free-living,
island population. Evolution, 1259-1267.
Examples
1
2
3
data(mouse_msats)
genotypes <- convert_raw(mouse_msats)
het <- sMLH(genotypes)
inbreedR documentation built on Feb. 2, 2022, 5:09 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) References Examples
Description
sMLH is defined as the total number of heterozygous loci in an individual divided by the sum of average observed heterozygosities in the population over the subset of loci successfully typed in the focal individual.
Usage
1 | sMLH(genotypes)
|
Arguments
genotypes |
data.frame with individuals in rows and loci in columns,
containing genotypes coded as 0 (homozygote), 1 (heterozygote) and |
Value
Vector of individual standardized multilocus heterozygosities
Author(s)
Martin A. Stoffel (martin.adam.stoffel@gmail.com)
References
Coltman, D. W., Pilkington, J. G., Smith, J. A., & Pemberton, J. M. (1999). Parasite-mediated selection against inbred Soay sheep in a free-living, island population. Evolution, 1259-1267.
Examples
1 2 3 | data(mouse_msats)
genotypes <- convert_raw(mouse_msats)
het <- sMLH(genotypes)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.