Man pages for invitroTKstats
In Vitro Toxicokinetic Data Processing and Analysis Pipeline
| build_mydata_clint | Build Data Object for Intrinsic Hepatic Clearance (Clint)... |
| build_mydata_fup_red | Build Data Object for Fup RED Bayesian Model |
| build_mydata_fup_uc | Build Data Object for Fup UC Bayesian Model |
| caco2_cheminfo | Caco-2 Chemical Information Example Data set |
| caco2_L0 | Caco-2 Level-0 Example Data set |
| caco2_L1 | Caco-2 Level-1 Example Data set |
| caco2_L2 | Caco-2 Level-2 Example Data set |
| caco2_L3 | Caco-2 Level-3 Example Data set |
| calc_caco2_point | Calculate a Point Estimate of Apparent Membrane Permeability... |
| calc_clint | Calculate Intrinsic Hepatic Clearance (Clint) with Bayesian... |
| calc_clint_point | Calculate a Point Estimate of Intrinsic Hepatic Clearance... |
| calc_fup_red | Calculate Fraction Unbound in Plasma (Fup) from Rapid... |
| calc_fup_red_point | Calculate Point Estimates of Fraction Unbound in Plasma (Fup)... |
| calc_fup_uc | Calculate Fraction Unbound in Plasma (Fup) from... |
| calc_fup_uc_point | Calculate Point Estimates of Fraction Unbound in Plasma (Fup)... |
| check_catalog | Function to Check Level 0 Data Catalog |
| clint_cheminfo | Clint Chemical Information Example Data set |
| clint_L0 | Clint Level-0 Example Data set |
| clint_L1 | Clint Level-1 Example Data set |
| clint_L2 | Clint Level-2 Example Data set |
| clint_L2_heldout | Clint Level-2 Heldout Example Data set |
| clint_L3 | Clint Level-3 Example Data set |
| clint_L4 | Clint Level-4 Example Data set |
| clint_PREJAGS | Clint Level-4 PREJAGS arguments |
| create_catalog | Function to create a catalog of level 0 files to be merged. |
| create_chem_table | Creates a Standardized Data Table of Chemical Identities |
| create_method_table | Creates a Standardized Data Table for Chemical Analysis... |
| dot-check_all_miss_cols | Check if all the data is missing for specified columns. |
| dot-check_char_cols | Check the character columns are correctly of character class. |
| dot-check_no_miss_cols | Check there is no missing data for specified columns. |
| dot-check_num_cols | Check the numeric columns are correctly of numeric class. |
| dot-check_std_colnames_in_data | Check the standard column names are in the data. |
| extract_level1_fup_uc | Extract level 1 ultracentrifugation... |
| format_caco2 | Creates a Standardized Data Frame with Caco-2 Data (Level-1) |
| format_clint | Creates a Standardized Data Frame with Hepatocyte Clearance... |
| format_fup_red | Creates a Standardized Data Frame with Rapid Equilibrium... |
| format_fup_uc | Creates a Standardized Data Frame with Ultracentrifugation... |
| fup_red_cheminfo | Fup RED Chemical Information Example Data set |
| fup_red_L0 | Fup RED Level-0 Example Data set |
| fup_red_L1 | Fup RED Level-1 Example Data set |
| fup_red_L2 | Fup RED Level-2 Example Data set |
| fup_red_L2_heldout | Fup RED Level-2 Heldout Example Data set |
| fup_red_L3 | Fup RED Level-3 Example Data set |
| fup_red_L4 | Fup RED Level-4 Example Data set |
| fup_red_PREJAGS | Fup RED Level-4 PREJAGS arguments |
| fup_uc_cheminfo | Fup UC Chemical Information Example Data set |
| fup_uc_L0 | Fup UC Level-0 Example Data set |
| fup_uc_L1 | Fup UC Level-1 Example Data set |
| fup_uc_L2 | Fup UC Level-2 Example Data set |
| fup_uc_L2_heldout | Fup UC Level-2 Heldout Example Data set |
| fup_uc_L3 | Fup UC Level-3 Example Data set |
| fup_uc_L4 | Fup UC Level-4 Example Data set |
| fup_uc_PREJAGS | Fup UC Level-4 PREJAGS arguments |
| Heaviside | Heaviside |
| initfunction_clint | Set Initial Values for Intrinsic Hepatic Clearance (Clint)... |
| initfunction_fup_red | Set Initial Values for Fup RED Bayesian Model |
| initfunction_fup_uc | Set Initial Values for Fup UC Bayesian Model |
| L1.common.col | Common Columns in Level-1 |
| merge_level0 | Merge Multiple Level-0 files into a Single Table for... |
| plot_clint | Plot Mass Spectrometry Responses from Measurements of... |
| plot_fup_uc | Plot Mass Spectrometry Responses for Fraction Unbound in... |
| round_output | Round Numeric Data (Any Level and Assay) |
| runjagsdata.to.list | Convert a runjags-class object to a list |
| sample_verification | Add Sample Verification Column (Level-2) |
| scientific_10 | Formatting function for X-axis in log10-scale |
| std.catcols | Standard Data Catalog (Data Guide) Columns |
| summarize_table | Creates a Summary Table of Mass-Spectrometry (MS) Data |
