cox2.display: cox2.display: table for coxph.object with model option: TRUE...

In jstable: Create Tables from Different Types of Regression

Description

Table for coxph.object with model option: TRUE - allow "frailty" or "cluster" model

Usage

cox2.display(cox.obj.withmodel, dec = 2)

Arguments

cox.obj.withmodel	coxph.object with model option: TRUE
dec	Decimal point, Default: 2

Details

GEE like - cluster, Mixed effect model like - frailty

Value

Table, cluster/frailty info, metrics, caption

Examples

 library(survival);data(lung)
 fit1 <- coxph(Surv(time, status) ~ ph.ecog + age + cluster(inst), data = lung, model = TRUE)
 fit2 <- coxph(Surv(time, status) ~ ph.ecog + age + frailty(inst), data = lung, model = TRUE)
 cox2.display(fit1)
 cox2.display(fit2)

Example output

Registered S3 methods overwritten by 'lme4':
  method                          from
  cooks.distance.influence.merMod car 
  influence.merMod                car 
  dfbeta.influence.merMod         car 
  dfbetas.influence.merMod        car 
$table
        crude HR(95%CI)    crude P value adj. HR(95%CI)  adj. P value
ph.ecog "1.61 (1.25,2.08)" "< 0.001"     "1.56 (1.22,2)" "< 0.001"   
age     "1.02 (1.01,1.03)" "0.007"       "1.01 (1,1.02)" "0.085"     

$ranef
        [,1] [,2] [,3] [,4]
cluster   NA   NA   NA   NA
inst      NA   NA   NA   NA

$metric
                    [,1] [,2] [,3] [,4]
<NA>                  NA   NA   NA   NA
No. of observations  226   NA   NA   NA
No. of events        163   NA   NA   NA

$caption
[1] "Marginal Cox model on time ('time') to event ('status') - Group inst"

$table
        crude HR(95%CI)    crude P value adj. HR(95%CI)     adj. P value
ph.ecog "1.64 (1.31,2.05)" "< 0.001"     "1.58 (1.26,1.99)" "< 0.001"   
age     "1.02 (1,1.04)"    "0.041"       "1.01 (0.99,1.03)" "0.225"     

$ranef
        [,1] [,2] [,3] [,4]
frailty   NA   NA   NA   NA
inst      NA   NA   NA   NA

$metric
                    [,1] [,2] [,3] [,4]
<NA>                  NA   NA   NA   NA
No. of observations  226   NA   NA   NA
No. of events        163   NA   NA   NA

$caption
[1] "Frailty Cox model on time ('time') to event ('status') - Group inst"

jstable documentation built on Oct. 19, 2021, 5:07 p.m.