readVCF2: Read VCF file using tabix.
In kmeRtone: Multi-Purpose and Flexible k-Meric Enrichment Analysis Software
readVCF2 R Documentation
Read VCF file using tabix.
Description
Require tabix in PATH
VCF manual is referred from https://samtools.github.io/hts-specs/VCFv4.3.pdf
Usage
readVCF2(vcf.file, chr.names, starts, ends, INFO.filter = NULL)
Arguments
vcf.file
A path to a local or remote tabix-indexed VCF file.
chr.names
Chromosome names.
starts
Start positions.
ends
End positions.
INFO.filter
Parse only filtered INFO ID. Default is to parse all IDs.
Value
A data.table of VCF.
kmeRtone documentation built on Sept. 11, 2024, 9:12 p.m.
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| readVCF2 | R Documentation |
Read VCF file using tabix.
Description
Require tabix in PATH VCF manual is referred from https://samtools.github.io/hts-specs/VCFv4.3.pdf
Usage
readVCF2(vcf.file, chr.names, starts, ends, INFO.filter = NULL)
Arguments
vcf.file |
A path to a local or remote tabix-indexed VCF file. |
chr.names |
Chromosome names. |
starts |
Start positions. |
ends |
End positions. |
INFO.filter |
Parse only filtered INFO ID. Default is to parse all IDs. |
Value
A data.table of VCF.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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