API for ldsep
Linkage Disequilibrium Shrinkage Estimation for Polyploids
| Global functions | |
|---|---|
| Dfromg | Source code |
| Dprime | Man page Source code |
| convert_ld | Source code |
| dD_dprob | Source code |
| dD_dqlm | Source code |
| dDprime_dprob | Source code |
| ddprime_dqlm | Source code |
| dllike_geno_dpar | Source code |
| dllike_genolike_dpar | Source code |
| dlprior_dprob | Source code |
| dlprior_par_dprob | Source code |
| dmulti_double | Source code |
| dmulti_dprob | Source code |
| dmvnorm | Source code |
| dproballgeno_dprob | Source code |
| dproballgenolike_dprob | Source code |
| dprobgeno_dprob | Source code |
| dprobgenolike_dprob | Source code |
| dr2_dprob | Source code |
| dr2_dqlm | Source code |
| dreal_to_simplex_dy | Source code |
| dsimplex_to_real_dx | Source code |
| em_jointgeno | Source code |
| expit | Source code |
| fill_pm | Source code |
| fill_pv | Source code |
| find_mle | Source code |
| format_lddf | Man page Source code |
| genolike_em | Source code |
| get_Amat | Source code |
| get_dprobgeno_dprob_array | Source code |
| get_prob_array | Man page Source code |
| gl_to_gp | Man page Source code |
| glike | Man page |
| gp | Man page |
| grad_delta_m | Source code |
| grad_deltaprime_m | Source code |
| grad_rho_m | Source code |
| hessian_jointgeno | Source code |
| is.lddf | Man page Source code |
| ld_from_gmat | Source code |
| ld_from_pbnorm | Source code |
| ldest | Man page Source code |
| ldest_comp | Man page Source code |
| ldest_hap | Man page Source code |
| ldfast | Man page Source code |
| ldsep | Man page |
| ldsep-package | Man page |
| ldshrink | Man page Source code |
| ldsimp | Source code |
| llike_geno | Source code |
| llike_genolike | Source code |
| llike_jointgeno | Source code |
| llike_jointgeno_vec | Source code |
| llike_pbnorm_genolike | Source code |
| log_sum_exp | Source code |
| log_sum_exp_2 | Source code |
| log_sum_exp_mat | Source code |
| logit | Source code |
| lprior | Source code |
| lprior_par | Source code |
| maxq_from_allelef | Source code |
| maxq_from_marg | Source code |
| mldest | Man page Source code |
| mldest_geno | Source code |
| mldest_genolike | Source code |
| mycor | Source code |
| nullvec_comp | Source code |
| nullvec_hap | Source code |
| obj_pbnorm_genolike | Source code |
| pbnorm_dist | Man page Source code |
| plog_sum_exp | Source code |
| plog_sum_exp_mat | Source code |
| plot.lddf | Man page Source code |
| prior_mu | Source code |
| prior_sigma | Source code |
| proballgeno | Source code |
| proballgenolike | Source code |
| proballgenolike_old | Source code |
| probgeno | Source code |
| probgenolike | Source code |
| pvcalc | Man page Source code |
| r2fromg | Source code |
| real_to_simplex | Source code |
| secalc | Source code |
| simplex_proj | Source code |
| simplex_to_real | Source code |
| slcor | Man page Source code |
| sldest | Man page Source code |
| uit | Man page |
| zshrink | Man page Source code |
