glike: Genotype log-likelihoods from 'uit'

In ldsep: Linkage Disequilibrium Shrinkage Estimation for Polyploids

Genotype log-likelihoods from uit

Description

Contains an array of genotype log-likelihoods from the uit dataset. Element gp[i, j, k] is the log-likelihood of dosage k-1 for individual j at SNP i.

Usage

glike

Format

A three-dimensional array object.

Source

doi: 10.1371/journal.pone.0062355

References

• Uitdewilligen, Jan GAML, Anne-Marie A. Wolters, B. Bjorn, Theo JA Borm, Richard GF Visser, and Herman J. Van Eck. "A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato." PloS one 8, no. 5 (2013): e62355. doi: 10.1371/journal.pone.0062355

See Also

uit for the full multidog() fit.

ldsep documentation built on Oct. 19, 2022, 1:08 a.m.