get_prob_array: Obtain the distribution of genotypes given haplotype...

In ldsep: Linkage Disequilibrium Shrinkage Estimation for Polyploids

Obtain the distribution of genotypes given haplotype frequencies under HWE

Description

This function will calculate the (log) probabilities for all genotype combinations at two loci given just the haplotype frequencies. This is under the assumptions of HWE.

Usage

get_prob_array(K, prob, log_p = TRUE)

Arguments

K	The ploidy of the species.
prob	Haplotype frequencies in the order of (ab, Ab, aB, AB).
log_p	A logical. Should we return the log-probabilities (TRUE) or the probabilities (FALSE). Defaults to TRUE.

Value

Element (i, j) is the (log) probability of genotype i-1 at locus 1 and genotype j-1 at locus 2.

Author(s)

David Gerard

Examples

get_prob_array(K = 6, prob = c(0.1, 0.2, 0.3, 0.4), log_p = FALSE)

ldsep documentation built on Oct. 19, 2022, 1:08 a.m.