Files in ldsep

Linkage Disequilibrium Shrinkage Estimation for Polyploids

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/ldgeno.R R/data.R R/ldsep-package.R R/multild.R R/maxd.R R/generics.R R/fast.R R/mds.R R/mom.R R/sliding_window.R

src/Makevars.win

src/Makevars

src/priors.cpp

src/postmom.cpp

src/genolike.cpp

src/RcppExports.cpp

src/derivatives.cpp

src/pbnorm.cpp

src/utils.cpp

src/em.cpp

src/multinom.cpp

inst/CITATION

inst/doc/vcf.R inst/doc/fast.Rmd

inst/doc/fast.html

inst/doc/fast.R inst/doc/vcf.Rmd

inst/doc/vcf.html

inst/extdata/subuit.vcf

build/vignette.rds

build/partial.rdb

tests/testthat.R

tests/testthat/pgA.csv

tests/testthat/test-ldfast.R tests/testthat/test-hessian.R

tests/testthat/pgB.csv

tests/testthat/gmat.RDS

tests/testthat/test-ld_from_gmat.R tests/testthat/test-multinomial.R tests/testthat/test-lp.R tests/testthat/test-posteriormean.R tests/testthat/test-convert.R tests/testthat/test-pbnorm.R tests/testthat/test-problem_data.R tests/testthat/test-cube.R tests/testthat/test-conversion.R

tests/testthat/problem_llike_geno.RData

tests/testthat/test-derivatives.R tests/testthat/test-em_vs_grad.R vignettes/fast.Rmd vignettes/vcf.Rmd

data/glike.rda

data/uit.rda

data/gp.rda

man/pvcalc.Rd man/glike.Rd man/slcor.Rd man/Dprime.Rd man/gp.Rd man/get_prob_array.Rd man/pbnorm_dist.Rd man/ldest_hap.Rd man/ldest_comp.Rd man/plot.lddf.Rd man/gl_to_gp.Rd man/ldest.Rd man/uit.Rd man/mldest.Rd man/ldshrink.Rd man/sldest.Rd man/zshrink.Rd man/is.lddf.Rd man/ldsep-package.Rd man/format_lddf.Rd man/ldfast.Rd

man/figures/logo.png

ldsep documentation built on Oct. 19, 2022, 1:08 a.m.