gp: Posterior probabilities from 'uit'

In ldsep: Linkage Disequilibrium Shrinkage Estimation for Polyploids

Posterior probabilities from uit

Description

Contains an array of posterior probabilities of the genotypes from the uit dataset. Element gp[i, j, k] is the posterior probability of dosage k-1 for individual j at SNP i.

Usage

gp

Format

A three-dimensional array object.

Source

\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pone.0062355")}

References

• Uitdewilligen, Jan GAML, Anne-Marie A. Wolters, B. Bjorn, Theo JA Borm, Richard GF Visser, and Herman J. Van Eck. "A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato." PloS one 8, no. 5 (2013): e62355. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1371/journal.pone.0062355")}

See Also

uit for the full multidog() fit.

ldsep documentation built on Nov. 5, 2025, 6:25 p.m.