pvcalc: Calculate prior variances from a matrix of prior genotype...
In ldsep: Linkage Disequilibrium Shrinkage Estimation for Polyploids
pvcalc R Documentation
Calculate prior variances from a matrix of prior genotype probabilities.
Description
Given a matrix of prior probabilities for the genotypes at each SNP,
this function will calculate the prior variance of genotypes.
Usage
pvcalc(priormat)
Arguments
priormat
A matrix of prior genotype probabilities. Element
priormat[i, j] is the prior probability of dosage j
at SNP i.
Value
A vector of prior variances.
Author(s)
David Gerard
Examples
data("uit")
priormat <- uit$snpdf[, paste0("Pr_", 0:4)]
pvcalc(priormat)
ldsep documentation built on Oct. 19, 2022, 1:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| pvcalc | R Documentation |
Calculate prior variances from a matrix of prior genotype probabilities.
Description
Given a matrix of prior probabilities for the genotypes at each SNP, this function will calculate the prior variance of genotypes.
Usage
pvcalc(priormat)
Arguments
priormat |
A matrix of prior genotype probabilities. Element
|
Value
A vector of prior variances.
Author(s)
David Gerard
Examples
data("uit")
priormat <- uit$snpdf[, paste0("Pr_", 0:4)]
pvcalc(priormat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.