API for ldsep
Linkage Disequilibrium Shrinkage Estimation for Polyploids

Global functions
Dfromg Source code
Dprime Man page Source code
convert_ld Source code
dD_dprob Source code
dD_dqlm Source code
dDprime_dprob Source code
ddprime_dqlm Source code
dllike_geno_dpar Source code
dllike_genolike_dpar Source code
dlprior_dprob Source code
dlprior_par_dprob Source code
dmulti_double Source code
dmulti_dprob Source code
dmvnorm Source code
dproballgeno_dprob Source code
dproballgenolike_dprob Source code
dprobgeno_dprob Source code
dprobgenolike_dprob Source code
dr2_dprob Source code
dr2_dqlm Source code
dreal_to_simplex_dy Source code
dsimplex_to_real_dx Source code
em_jointgeno Source code
expit Source code
fill_pm Source code
fill_pv Source code
find_mle Source code
format_lddf Man page Source code
genolike_em Source code
get_Amat Source code
get_dprobgeno_dprob_array Source code
get_prob_array Man page Source code
gl_to_gp Man page Source code
glike Man page
gp Man page
grad_delta_m Source code
grad_deltaprime_m Source code
grad_rho_m Source code
hessian_jointgeno Source code
is.lddf Man page Source code
ld_from_gmat Source code
ld_from_pbnorm Source code
ldest Man page Source code
ldest_comp Man page Source code
ldest_hap Man page Source code
ldfast Man page Source code
ldsep Man page
ldsep-package Man page
ldshrink Man page Source code
ldsimp Source code
llike_geno Source code
llike_genolike Source code
llike_jointgeno Source code
llike_jointgeno_vec Source code
llike_pbnorm_genolike Source code
log_sum_exp Source code
log_sum_exp_2 Source code
log_sum_exp_mat Source code
logit Source code
lprior Source code
lprior_par Source code
maxq_from_allelef Source code
maxq_from_marg Source code
mldest Man page Source code
mldest_geno Source code
mldest_genolike Source code
nullvec_comp Source code
nullvec_hap Source code
obj_pbnorm_genolike Source code
pbnorm_dist Man page Source code
plog_sum_exp Source code
plog_sum_exp_mat Source code
plot.lddf Man page Source code
prior_mu Source code
prior_sigma Source code
proballgeno Source code
proballgenolike Source code
proballgenolike_old Source code
probgeno Source code
probgenolike Source code
pvcalc Man page Source code
r2fromg Source code
real_to_simplex Source code
secalc Source code
simplex_proj Source code
simplex_to_real Source code
sldest Man page Source code
uit Man page
zshrink Man page Source code
ldsep documentation built on Feb. 17, 2021, 9:05 a.m.