Files in ldsep
Linkage Disequilibrium Shrinkage Estimation for Polyploids
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/ldgeno.R
R/data.R
R/ldsep-package.R
R/multild.R
R/maxd.R
R/generics.R
R/fast.R
R/mds.R
R/mom.R
R/sliding_window.R
src/Makevars.win
src/Makevars
src/priors.cpp
src/postmom.cpp
src/genolike.cpp
src/RcppExports.cpp
src/derivatives.cpp
src/pbnorm.cpp
src/utils.cpp
src/em.cpp
src/multinom.cpp
inst/CITATION
inst/doc/vcf.R
inst/doc/fast.Rmd
inst/doc/fast.html
inst/doc/fast.R
inst/doc/vcf.Rmd
inst/doc/vcf.html
inst/extdata/subuit.vcf
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/pgA.csv
tests/testthat/test-ldfast.R
tests/testthat/test-hessian.R
tests/testthat/pgB.csv
tests/testthat/gmat.RDS
tests/testthat/test-ld_from_gmat.R
tests/testthat/test-multinomial.R
tests/testthat/test-lp.R
tests/testthat/test-posteriormean.R
tests/testthat/test-convert.R
tests/testthat/test-pbnorm.R
tests/testthat/test-problem_data.R
tests/testthat/test-cube.R
tests/testthat/test-conversion.R
tests/testthat/problem_llike_geno.RData
tests/testthat/test-derivatives.R
tests/testthat/test-em_vs_grad.R
vignettes/fast.Rmd
vignettes/vcf.Rmd
data/glike.rda
data/uit.rda
data/gp.rda
man/pvcalc.Rd
man/glike.Rd
man/slcor.Rd
man/Dprime.Rd
man/gp.Rd
man/get_prob_array.Rd
man/pbnorm_dist.Rd
man/ldest_hap.Rd
man/ldest_comp.Rd
man/plot.lddf.Rd
man/gl_to_gp.Rd
man/ldest.Rd
man/uit.Rd
man/mldest.Rd
man/ldshrink.Rd
man/sldest.Rd
man/zshrink.Rd
man/is.lddf.Rd
man/ldsep-package.Rd
man/format_lddf.Rd
man/ldfast.Rd
man/figures/logo.png
