MidSeq: Protein sequence

MidSeqR Documentation

Protein sequence

Description

A protein sequence.

Usage

MidSeq

Format

A character string with 219 characters corresponding to P49755.fasta query in UniProt Data base.

Source

https://www.uniprot.org/

Examples

data(MidSeq)
MidSeq
nchar(MidSeq)
data(dico)
MidSeqScore=CharSequence2ScoreSequence(MidSeq,dico)
MidSeqScore[1:30]
localScoreC(MidSeqScore)$localScore
prob1 = scoreSequences2probabilityVector(list(MidSeqScore))
daudin(localScore = 52, sequence_length = nchar(MidSeq),
               score_probabilities = prob1,
               sequence_min = min(MidSeqScore),
               sequence_max = max(MidSeqScore))
score=-5:5
prob2=c(0.15,0.15,0.1,0.1,0.0,0.05,0.15,0.05,0.2,0.0,0.05)
daudin(localScore = 52, sequence_length = nchar(MidSeq),
       score_probabilities = prob2,
       sequence_min = min(MidSeqScore),
       sequence_max = max(MidSeqScore))

localScore documentation built on May 17, 2022, 5:09 p.m.