mRMRe: R package for parallelized mRMR ensemble feature selection

This package contains a set of function to compute mutual information matrices from continuous, categorical and survival variables. It also contains function to perform feature selection with mRMR and a new ensemble mRMR technique.

AuthorNicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Gianluca Bontempi, Benjamin Haibe-Kains
Date of publication2015-03-21 19:47:33
MaintainerBenjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
LicenseArtistic-2.0
Version2.0.5
http://www.pmgenomics.ca/bhklab/

View on CRAN

Functions

adjacencyMatrix Man page
adjacencyMatrix,mRMRe.Network-method Man page
adjacencyMatrixSum Man page
adjacencyMatrixSum,mRMRe.Network-method Man page
causality Man page
causality,mRMRe.Filter-method Man page
causality,mRMRe.Network-method Man page
cgps.annot Man page
cgps.ge Man page
cgps.ic50 Man page
correlate Man page
featureCount Man page
featureCount,mRMRe.Data-method Man page
featureCount,mRMRe.Filter-method Man page
featureCount,mRMRe.Network-method Man page
featureData Man page
featureData,mRMRe.Data-method Man page
featureNames Man page
featureNames,mRMRe.Data-method Man page
featureNames,mRMRe.Filter-method Man page
featureNames,mRMRe.Network-method Man page
get.thread.count Man page
mim Man page
mim,mRMRe.Data-method Man page
mim,mRMRe.Filter-method Man page
mim,mRMRe.Network-method Man page
mRMR.classic Man page
mRMR.data Man page
mRMRe.Data-class Man page
mRMRe.Filter-class Man page
mRMRe.Network-class Man page
mRMR.ensemble Man page
mRMR.network Man page
priors Man page
priors<- Man page
priors<-,mRMRe.Data-method Man page
priors,mRMRe.Data-method Man page
sampleCount Man page
sampleCount,mRMRe.Data-method Man page
sampleCount,mRMRe.Filter-method Man page
sampleCount,mRMRe.Network-method Man page
sampleNames Man page
sampleNames,mRMRe.Data-method Man page
sampleNames,mRMRe.Filter-method Man page
sampleNames,mRMRe.Network-method Man page
sampleStrata Man page
sampleStrata<- Man page
sampleStrata<-,mRMRe.Data-method Man page
sampleStrata,mRMRe.Data-method Man page
sampleWeights Man page
sampleWeights<- Man page
sampleWeights<-,mRMRe.Data-method Man page
sampleWeights,mRMRe.Data-method Man page
scores Man page
scores,mRMRe.Data-method Man page
scores,mRMRe.Filter-method Man page
scores,mRMRe.Network-method Man page
set.thread.count Man page
solutions Man page
solutions,mRMRe.Filter-method Man page
solutions,mRMRe.Network-method Man page
subsetData Man page
subsetData,mRMRe.Data-method Man page
target Man page
target,mRMRe.Filter-method Man page
target,mRMRe.Network-method Man page
visualize Man page
visualize,mRMRe.Network-method Man page

Files

mRMRe
mRMRe/TODO
mRMRe/inst
mRMRe/inst/CITATION
mRMRe/inst/doc
mRMRe/inst/doc/mRMRe.R
mRMRe/inst/doc/mRMRe.pdf
mRMRe/inst/doc/mRMRe.Rnw
mRMRe/src
mRMRe/src/Makevars
mRMRe/src/Filter.h
mRMRe/src/Matrix.cpp
mRMRe/src/Math.h
mRMRe/src/Matrix.h
mRMRe/src/Data.h
mRMRe/src/Filter.cpp
mRMRe/src/Data.cpp
mRMRe/src/MutualInformationMatrix.cpp
mRMRe/src/MutualInformationMatrix.h
mRMRe/src/Math.cpp
mRMRe/src/exports.cpp
mRMRe/src/exports.h
mRMRe/NAMESPACE
mRMRe/data
mRMRe/data/cgps.rda
mRMRe/data/datalist
mRMRe/R
mRMRe/R/mRMRe.Filter.R mRMRe/R/mRMRe.Data.R mRMRe/R/generics.R mRMRe/R/mRMRe.Network.R
mRMRe/vignettes
mRMRe/vignettes/mRMRe.Rnw
mRMRe/vignettes/biblio.bib
mRMRe/MD5
mRMRe/README
mRMRe/build
mRMRe/build/vignette.rds
mRMRe/DESCRIPTION
mRMRe/man
mRMRe/man/mRMRe.Network-class.Rd mRMRe/man/sampleCount.Rd mRMRe/man/scores.Rd mRMRe/man/correlate.Rd mRMRe/man/causality.Rd mRMRe/man/mRMRe.Data-class.Rd mRMRe/man/mRMRe.Filter-class.Rd mRMRe/man/featureCount.Rd mRMRe/man/adjacencyMatrix.Rd mRMRe/man/sampleWeights.Rd mRMRe/man/set.thread.count.Rd mRMRe/man/target.Rd mRMRe/man/solutions.Rd mRMRe/man/visualize.Rd mRMRe/man/sampleNames.Rd mRMRe/man/priors.Rd mRMRe/man/subsetData.Rd mRMRe/man/featureData.Rd mRMRe/man/featureNames.Rd mRMRe/man/cgps.Rd mRMRe/man/mim.Rd mRMRe/man/get.thread.count.Rd mRMRe/man/sampleStrata.Rd
mRMRe/.Rinstignore

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.