mRMRe: R package for parallelized mRMR ensemble feature selection
Version 2.0.5

This package contains a set of function to compute mutual information matrices from continuous, categorical and survival variables. It also contains function to perform feature selection with mRMR and a new ensemble mRMR technique.

Browse man pages Browse package API and functions Browse package files

AuthorNicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Gianluca Bontempi, Benjamin Haibe-Kains
Date of publication2015-03-21 19:47:33
MaintainerBenjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
LicenseArtistic-2.0
Version2.0.5
URL http://www.pmgenomics.ca/bhklab/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mRMRe")

Man pages

adjacencyMatrix: Accessor function for the 'adjacencyMatrix' information in a...
causality: Accessor function for the 'causality' information in a...
cgps: Part of the large pharmacogenomic dataset published by...
correlate: Function to compute various correlation measures between two...
featureCount: Accessor function for the 'featureCount' information in a...
featureData: Accessor function for the 'featureData' information in a...
featureNames: Accessor function for the 'featureNames' information in a...
get.thread.count: openMP Thread Count
mim: Accessor function for the 'mim' information in a mRMRe.Data,...
mRMRe.Data-class: Class '"mRMRe.Data"'
mRMRe.Filter-class: Class '"mRMRe.Filter"'
mRMRe.Network-class: Class '"mRMRe.Network"'
priors: Accessor function for the 'priors' information in a...
sampleCount: Accessor function for the 'sampleCount' information in a...
sampleNames: Accessor function for the 'sampleNames' information in a...
sampleStrata: Accessor function for the 'sampleStrata' information in a...
sampleWeights: Accessor function for the 'sampleWeights' information in a...
scores: mRMR Scores as per the MI gain for each feature
set.thread.count: openMP Thread Count
solutions: Basic result of the mRMR procedure
subsetData: Returns a mRMRe.Data object using a subset of the current...
target: mRMR Target(s)
visualize: mRMRe Network display

Functions

adjacencyMatrix Man page
adjacencyMatrix,mRMRe.Network-method Man page
adjacencyMatrixSum Man page
adjacencyMatrixSum,mRMRe.Network-method Man page
causality Man page
causality,mRMRe.Filter-method Man page
causality,mRMRe.Network-method Man page
cgps.annot Man page
cgps.ge Man page
cgps.ic50 Man page
correlate Man page
featureCount Man page
featureCount,mRMRe.Data-method Man page
featureCount,mRMRe.Filter-method Man page
featureCount,mRMRe.Network-method Man page
featureData Man page
featureData,mRMRe.Data-method Man page
featureNames Man page
featureNames,mRMRe.Data-method Man page
featureNames,mRMRe.Filter-method Man page
featureNames,mRMRe.Network-method Man page
get.thread.count Man page
mRMR.classic Man page
mRMR.data Man page
mRMR.ensemble Man page
mRMR.network Man page
mRMRe.Data-class Man page
mRMRe.Filter-class Man page
mRMRe.Network-class Man page
mim Man page
mim,mRMRe.Data-method Man page
mim,mRMRe.Filter-method Man page
mim,mRMRe.Network-method Man page
priors Man page
priors,mRMRe.Data-method Man page
priors<- Man page
priors<-,mRMRe.Data-method Man page
sampleCount Man page
sampleCount,mRMRe.Data-method Man page
sampleCount,mRMRe.Filter-method Man page
sampleCount,mRMRe.Network-method Man page
sampleNames Man page
sampleNames,mRMRe.Data-method Man page
sampleNames,mRMRe.Filter-method Man page
sampleNames,mRMRe.Network-method Man page
sampleStrata Man page
sampleStrata,mRMRe.Data-method Man page
sampleStrata<- Man page
sampleStrata<-,mRMRe.Data-method Man page
sampleWeights Man page
sampleWeights,mRMRe.Data-method Man page
sampleWeights<- Man page
sampleWeights<-,mRMRe.Data-method Man page
scores Man page
scores,mRMRe.Data-method Man page
scores,mRMRe.Filter-method Man page
scores,mRMRe.Network-method Man page
set.thread.count Man page
solutions Man page
solutions,mRMRe.Filter-method Man page
solutions,mRMRe.Network-method Man page
subsetData Man page
subsetData,mRMRe.Data-method Man page
target Man page
target,mRMRe.Filter-method Man page
target,mRMRe.Network-method Man page
visualize Man page
visualize,mRMRe.Network-method Man page

Files

TODO
inst
inst/CITATION
inst/doc
inst/doc/mRMRe.R
inst/doc/mRMRe.pdf
inst/doc/mRMRe.Rnw
src
src/Makevars
src/Filter.h
src/Matrix.cpp
src/Math.h
src/Matrix.h
src/Data.h
src/Filter.cpp
src/Data.cpp
src/MutualInformationMatrix.cpp
src/MutualInformationMatrix.h
src/Math.cpp
src/exports.cpp
src/exports.h
NAMESPACE
data
data/cgps.rda
data/datalist
R
R/mRMRe.Filter.R
R/mRMRe.Data.R
R/generics.R
R/mRMRe.Network.R
vignettes
vignettes/mRMRe.Rnw
vignettes/biblio.bib
MD5
README
build
build/vignette.rds
DESCRIPTION
man
man/mRMRe.Network-class.Rd
man/sampleCount.Rd
man/scores.Rd
man/correlate.Rd
man/causality.Rd
man/mRMRe.Data-class.Rd
man/mRMRe.Filter-class.Rd
man/featureCount.Rd
man/adjacencyMatrix.Rd
man/sampleWeights.Rd
man/set.thread.count.Rd
man/target.Rd
man/solutions.Rd
man/visualize.Rd
man/sampleNames.Rd
man/priors.Rd
man/subsetData.Rd
man/featureData.Rd
man/featureNames.Rd
man/cgps.Rd
man/mim.Rd
man/get.thread.count.Rd
man/sampleStrata.Rd
.Rinstignore
mRMRe documentation built on May 20, 2017, 1:02 a.m.