mRMRe: R package for parallelized mRMR ensemble feature selection

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This package contains a set of function to compute mutual information matrices from continuous, categorical and survival variables. It also contains function to perform feature selection with mRMR and a new ensemble mRMR technique.

Author
Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Gianluca Bontempi, Benjamin Haibe-Kains
Date of publication
2015-03-21 19:47:33
Maintainer
Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
License
Artistic-2.0
Version
2.0.5
URLs

View on CRAN

Man pages

adjacencyMatrix
Accessor function for the 'adjacencyMatrix' information in a...
causality
Accessor function for the 'causality' information in a...
cgps
Part of the large pharmacogenomic dataset published by...
correlate
Function to compute various correlation measures between two...
featureCount
Accessor function for the 'featureCount' information in a...
featureData
Accessor function for the 'featureData' information in a...
featureNames
Accessor function for the 'featureNames' information in a...
get.thread.count
openMP Thread Count
mim
Accessor function for the 'mim' information in a mRMRe.Data,...
mRMRe.Data-class
Class '"mRMRe.Data"'
mRMRe.Filter-class
Class '"mRMRe.Filter"'
mRMRe.Network-class
Class '"mRMRe.Network"'
priors
Accessor function for the 'priors' information in a...
sampleCount
Accessor function for the 'sampleCount' information in a...
sampleNames
Accessor function for the 'sampleNames' information in a...
sampleStrata
Accessor function for the 'sampleStrata' information in a...
sampleWeights
Accessor function for the 'sampleWeights' information in a...
scores
mRMR Scores as per the MI gain for each feature
set.thread.count
openMP Thread Count
solutions
Basic result of the mRMR procedure
subsetData
Returns a mRMRe.Data object using a subset of the current...
target
mRMR Target(s)
visualize
mRMRe Network display

Files in this package

mRMRe
mRMRe/TODO
mRMRe/inst
mRMRe/inst/CITATION
mRMRe/inst/doc
mRMRe/inst/doc/mRMRe.R
mRMRe/inst/doc/mRMRe.pdf
mRMRe/inst/doc/mRMRe.Rnw
mRMRe/src
mRMRe/src/Makevars
mRMRe/src/Filter.h
mRMRe/src/Matrix.cpp
mRMRe/src/Math.h
mRMRe/src/Matrix.h
mRMRe/src/Data.h
mRMRe/src/Filter.cpp
mRMRe/src/Data.cpp
mRMRe/src/MutualInformationMatrix.cpp
mRMRe/src/MutualInformationMatrix.h
mRMRe/src/Math.cpp
mRMRe/src/exports.cpp
mRMRe/src/exports.h
mRMRe/NAMESPACE
mRMRe/data
mRMRe/data/cgps.rda
mRMRe/data/datalist
mRMRe/R
mRMRe/R/mRMRe.Filter.R
mRMRe/R/mRMRe.Data.R
mRMRe/R/generics.R
mRMRe/R/mRMRe.Network.R
mRMRe/vignettes
mRMRe/vignettes/mRMRe.Rnw
mRMRe/vignettes/biblio.bib
mRMRe/MD5
mRMRe/README
mRMRe/build
mRMRe/build/vignette.rds
mRMRe/DESCRIPTION
mRMRe/man
mRMRe/man/mRMRe.Network-class.Rd
mRMRe/man/sampleCount.Rd
mRMRe/man/scores.Rd
mRMRe/man/correlate.Rd
mRMRe/man/causality.Rd
mRMRe/man/mRMRe.Data-class.Rd
mRMRe/man/mRMRe.Filter-class.Rd
mRMRe/man/featureCount.Rd
mRMRe/man/adjacencyMatrix.Rd
mRMRe/man/sampleWeights.Rd
mRMRe/man/set.thread.count.Rd
mRMRe/man/target.Rd
mRMRe/man/solutions.Rd
mRMRe/man/visualize.Rd
mRMRe/man/sampleNames.Rd
mRMRe/man/priors.Rd
mRMRe/man/subsetData.Rd
mRMRe/man/featureData.Rd
mRMRe/man/featureNames.Rd
mRMRe/man/cgps.Rd
mRMRe/man/mim.Rd
mRMRe/man/get.thread.count.Rd
mRMRe/man/sampleStrata.Rd
mRMRe/.Rinstignore