sampleNames: Accessor function for the 'sampleNames' information in a...

Description Usage Arguments Author(s) Examples

Description

sampleNames are the names of the samples given as input to the mRMRe procedure.

Usage

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## S4 method for signature 'mRMRe.Data'
sampleNames(object)
## S4 method for signature 'mRMRe.Filter'
sampleNames(object)
## S4 method for signature 'mRMRe.Network'
sampleNames(object)

Arguments

object

a mRMRe.Data, mRMRe.Filter or mRMRe.Network object.

Author(s)

Nicolas De Jay, Simon Papillon-Cavanagh, Benjamin Haibe-Kains

Examples

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set.thread.count(2)
data(cgps)
feature_data <- mRMR.data(data = data.frame(cgps.ge))
sampleNames(feature_data)
filter <- mRMR.classic("mRMRe.Filter", data = feature_data, target_indices = 3:5,
						feature_count = 2)
sampleNames(filter)

Example output

Loading required package: survival
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

[1] 2
  [1] "22RV1"           "5637"            "639_V"           "647_V"          
  [5] "697"             "769_P"           "786_0"           "8_MG_BA"        
  [9] "A101D"           "A204"            "A3_KAW"          "A431"           
 [13] "A498"            "A4_FUK"          "A549"            "A673"           
 [17] "ACHN"            "ALL_PO"          "AM_38"           "AN3_CA"         
 [21] "ASPC_1"          "ATN_1"           "BALL_1"          "BB30_HNC"       
 [25] "BB49_HNC"        "BB65_RCC"        "BCPAP"           "BE_13"          
 [29] "BECKER"          "BEN"             "BFTC_905"        "BFTC_909"       
 [33] "BHY"             "BPH_1"           "BT_20"           "BV_173"         
 [37] "C2BBE1"          "C32"             "C_33_A"          "C3A"            
 [41] "C8166"           "CA9_22"          "CAKI_1"          "CAL_120"        
 [45] "CAL_27"          "CAL_33"          "CAL_39"          "CAL_51"         
 [49] "CAL_54"          "CAL_62"          "CAL_72"          "CAL_85_1"       
 [53] "CALU_3"          "CALU_6"          "CAPAN_1"         "CAPAN_2"        
 [57] "CAS_1"           "CA_SKI"          "CCRF_CEM"        "CFPAC_1"        
 [61] "CGTH_W_1"        "CHL_1"           "CHP_212"         "COLO_320_HSR"   
 [65] "COLO_668"        "COLO_678"        "COLO_679"        "COLO_680N"      
 [69] "COLO_684"        "COLO_792"        "COLO_824"        "COR_L23"        
 [73] "CTB_1"           "CW_2"            "D_247MG"         "D_263MG"        
 [77] "D_283MED"        "D_336MG"         "D_392MG"         "D_502MG"        
 [81] "DAOY"            "DB"              "DBTRG_05MG"      "DEL"            
 [85] "DETROIT562"      "DJM_1"           "DK_MG"           "DMS_273"        
 [89] "DOHH_2"          "DOK"             "DOTC2_4510"      "DSH1"           
 [93] "DU_145"          "EC_GI_10"        "EFM_19"          "EFO_21"         
 [97] "EFO_27"          "EGI_1"           "EM_2"            "EPLC_272H"      
[101] "ES1"             "ES3"             "ES5"             "ES6"            
[105] "ES7"             "ES8"             "ETK_1"           "EW_1"           
[109] "EW_11"           "EW_13"           "EW_16"           "EW_22"          
[113] "EW_24"           "FADU"            "FTC_133"         "G_401"          
[117] "GAMG"            "GCIY"            "GI_1"            "GI_ME_N"        
[121] "GMS_10"          "GP5D"            "GR_ST"           "GT3TKB"         
[125] "H4"              "HAL_01"          "HCC1395"         "HCC1806"        
[129] "HCC1954"         "HCC38"           "HCC70"           "HCE_4"          
[133] "HCT_116"         "HEC_1"           "HEL"             "HGC_27"         
[137] "HH"              "HL_60"           "HLE"             "HN"             
[141] "HO_1_N_1"        "HOP_92"          "HOS"             "HPAF_II"        
[145] "HSC_3"           "HT"              "HT_1080"         "HT_1376"        
[149] "HT_3"            "HTC_C3"          "HUCCT1"          "HUO_3N1"        
[153] "HUO9"            "HUP_T3"          "IGR_1"           "IST_MES1"       
[157] "IST_SL1"         "J82"             "JEG_3"           "J_RT3_T3_5"     
[161] "JVM_3"           "K5"              "KALS_1"          "KARPAS_299"     
[165] "KE_37"           "KGN"             "KINGS_1"         "KM_H2"          
[169] "KMOE_2"          "KNS_42"          "KNS_81_FD"       "KOSC_2"         
[173] "KP_4"            "KP_N_YS"         "KS_1"            "KU_19_19"       
[177] "KURAMOCHI"       "KYSE_140"        "KYSE_150"        "KYSE_180"       
[181] "KYSE_270"        "KYSE_410"        "KYSE_450"        "KYSE_510"       
[185] "KYSE_520"        "KYSE_70"         "L_363"           "L_428"          
[189] "LAMA_84"         "LAN_6"           "LB2241_RCC"      "LB2518_MEL"     
[193] "LB771_HNC"       "LB831_BLC"       "LCLC_103H"       "LK_2"           
[197] "LN_405"          "LNCAP_CLONE_FGC" "LOVO"            "LS_1034"        
  [1] "22RV1"           "5637"            "639_V"           "647_V"          
  [5] "697"             "769_P"           "786_0"           "8_MG_BA"        
  [9] "A101D"           "A204"            "A3_KAW"          "A431"           
 [13] "A498"            "A4_FUK"          "A549"            "A673"           
 [17] "ACHN"            "ALL_PO"          "AM_38"           "AN3_CA"         
 [21] "ASPC_1"          "ATN_1"           "BALL_1"          "BB30_HNC"       
 [25] "BB49_HNC"        "BB65_RCC"        "BCPAP"           "BE_13"          
 [29] "BECKER"          "BEN"             "BFTC_905"        "BFTC_909"       
 [33] "BHY"             "BPH_1"           "BT_20"           "BV_173"         
 [37] "C2BBE1"          "C32"             "C_33_A"          "C3A"            
 [41] "C8166"           "CA9_22"          "CAKI_1"          "CAL_120"        
 [45] "CAL_27"          "CAL_33"          "CAL_39"          "CAL_51"         
 [49] "CAL_54"          "CAL_62"          "CAL_72"          "CAL_85_1"       
 [53] "CALU_3"          "CALU_6"          "CAPAN_1"         "CAPAN_2"        
 [57] "CAS_1"           "CA_SKI"          "CCRF_CEM"        "CFPAC_1"        
 [61] "CGTH_W_1"        "CHL_1"           "CHP_212"         "COLO_320_HSR"   
 [65] "COLO_668"        "COLO_678"        "COLO_679"        "COLO_680N"      
 [69] "COLO_684"        "COLO_792"        "COLO_824"        "COR_L23"        
 [73] "CTB_1"           "CW_2"            "D_247MG"         "D_263MG"        
 [77] "D_283MED"        "D_336MG"         "D_392MG"         "D_502MG"        
 [81] "DAOY"            "DB"              "DBTRG_05MG"      "DEL"            
 [85] "DETROIT562"      "DJM_1"           "DK_MG"           "DMS_273"        
 [89] "DOHH_2"          "DOK"             "DOTC2_4510"      "DSH1"           
 [93] "DU_145"          "EC_GI_10"        "EFM_19"          "EFO_21"         
 [97] "EFO_27"          "EGI_1"           "EM_2"            "EPLC_272H"      
[101] "ES1"             "ES3"             "ES5"             "ES6"            
[105] "ES7"             "ES8"             "ETK_1"           "EW_1"           
[109] "EW_11"           "EW_13"           "EW_16"           "EW_22"          
[113] "EW_24"           "FADU"            "FTC_133"         "G_401"          
[117] "GAMG"            "GCIY"            "GI_1"            "GI_ME_N"        
[121] "GMS_10"          "GP5D"            "GR_ST"           "GT3TKB"         
[125] "H4"              "HAL_01"          "HCC1395"         "HCC1806"        
[129] "HCC1954"         "HCC38"           "HCC70"           "HCE_4"          
[133] "HCT_116"         "HEC_1"           "HEL"             "HGC_27"         
[137] "HH"              "HL_60"           "HLE"             "HN"             
[141] "HO_1_N_1"        "HOP_92"          "HOS"             "HPAF_II"        
[145] "HSC_3"           "HT"              "HT_1080"         "HT_1376"        
[149] "HT_3"            "HTC_C3"          "HUCCT1"          "HUO_3N1"        
[153] "HUO9"            "HUP_T3"          "IGR_1"           "IST_MES1"       
[157] "IST_SL1"         "J82"             "JEG_3"           "J_RT3_T3_5"     
[161] "JVM_3"           "K5"              "KALS_1"          "KARPAS_299"     
[165] "KE_37"           "KGN"             "KINGS_1"         "KM_H2"          
[169] "KMOE_2"          "KNS_42"          "KNS_81_FD"       "KOSC_2"         
[173] "KP_4"            "KP_N_YS"         "KS_1"            "KU_19_19"       
[177] "KURAMOCHI"       "KYSE_140"        "KYSE_150"        "KYSE_180"       
[181] "KYSE_270"        "KYSE_410"        "KYSE_450"        "KYSE_510"       
[185] "KYSE_520"        "KYSE_70"         "L_363"           "L_428"          
[189] "LAMA_84"         "LAN_6"           "LB2241_RCC"      "LB2518_MEL"     
[193] "LB771_HNC"       "LB831_BLC"       "LCLC_103H"       "LK_2"           
[197] "LN_405"          "LNCAP_CLONE_FGC" "LOVO"            "LS_1034"        

mRMRe documentation built on Sept. 5, 2021, 5:26 p.m.