Global functions | |
---|---|
.EMCSimard | Source code |
.EMCadsorption | Source code |
.EMCdesorption | Source code |
.Egamma | Source code |
.Egammainv | Source code |
.LAIdistribution | Source code |
.LAIdistributionVectors | Source code |
.LAIprofile | Source code |
.LAIprofileVectors | Source code |
.averageByLAISpecies | Source code |
.averageBySpecies | Source code |
.averageSubdailyBySpecies | Source code |
.betacf | Source code |
.checkSpeciesParameters | Source code |
.cloneInput | Source code |
.createCutShrubTable | Source code |
.createCutTreeTable | Source code |
.createDeadShrubTable | Source code |
.createDeadTreeTable | Source code |
.createShrubTable | Source code |
.createTreeTable | Source code |
.criticalFirelineIntensity | Source code |
.defineASPWBDailyOutput | Source code |
.defineGrowthDailyOutput | Source code |
.defineSPWBDailyOutput | Source code |
.dominantTreeDiameter | Source code |
.dominantTreeHeight | Source code |
.droughtstress_sim | Source code |
.extractSubdaily | Source code |
.fillASPWBDailyOutput | Source code |
.fillGrowthDailyOutput | Source code |
.fillSPWBDailyOutput | Source code |
.firehaz_sim | Source code |
.forest_plot_choices | Source code |
.fuelConditions | Source code |
.gammds | Source code |
.gammln | Source code |
.gdd | Source code |
.getCohortBiomassBalanceGROWTHPlotTypes | Source code |
.getDailyGROWTHPlotTypes | Source code |
.getDailyPWBPlotTypes | Source code |
.getDailySPWBPlotTypes | Source code |
.getEnergyPlotTypes | Source code |
.getGrowthMortalityGROWTHPlotTypes | Source code |
.getLabileGROWTHPlotTypes | Source code |
.getPlantPlotTypes | Source code |
.getSoilPlotTypes | Source code |
.getStandPlotTypes | Source code |
.getStructuralGROWTHPlotTypes | Source code |
.getSubdailyEnergyBalancePlotTypes | Source code |
.getSubdailyGROWTHPlotTypes | Source code |
.getSubdailyLabilePlotTypes | Source code |
.getSubdailyPlantPlotTypes | Source code |
.getSubdailySPWBPlotTypes | Source code |
.getSubdailySoilPlotTypes | Source code |
.getSubdailySunlitShadePlotTypes | Source code |
.getSunlitShadePlotTypes | Source code |
.getUniqueDailyGROWTHPlotTypes | Source code |
.getUniqueFORDYNPlotTypes | Source code |
.getWaterBalancePlotTypes | Source code |
.getWeatherDates | Source code |
.getYLab | Source code |
.growthInput | Source code |
.hartBeckingIndex | Source code |
.hydrology_interceptionGashDay | Source code |
.hydrology_interceptionLiuDay | Source code |
.incbeta | Source code |
.invincgam | Source code |
.layerCohortFuelLoading | Source code |
.layerFuelAverageCrownLength | Source code |
.layerFuelAverageParameter | Source code |
.layerFuelAverageSpeciesParameter | Source code |
.layerFuelLoading | Source code |
.layerLAI | Source code |
.mergeVectorOfMatrices | Source code |
.modifyInputParam | Source code |
.modifySoilLayerParam | Source code |
.multiple_dynamics | Source code |
.multiple_dynamics_range | Source code |
.multiple_dynamics_subdaily | Source code |
.multiple_dynamics_subdaily_sunlit_shade | Source code |
.multiple_subday_dynamics | Source code |
.multiple_subday_dynamics_sunlit_shade | Source code |
.multiple_x | Source code |
.multiple_y | Source code |
.multiplyInputParam | Source code |
.nextYearForest | Source code |
.onAttach | Source code |
.parExtinctionProfile | Source code |
.paramsBelow | Source code |
.parcohort | Source code |
.parheight | Source code |
.plot_biomass | Source code |
.plot_carbon | Source code |
.plot_energybalance | Source code |
.plot_plant_om | Source code |
.plot_plant_om_sum | Source code |
.plot_soil | Source code |
.plot_stand | Source code |
.plot_temperature | Source code |
.plot_wb | Source code |
.plotsubdaily | Source code |
.quadraticMeanTreeDiameter | Source code |
.resistances_sim | Source code |
.rootDistribution | Source code |
.rootDistributionComplete | Source code |
.shelteredMidflameWindSpeed | Source code |
.shinyplot_day | Source code |
.shinyplot_sim | Source code |
.shrubCover | Source code |
.shrubCrownRatio | Source code |
.shrubPhytovolume | Source code |
.single_dynamics | Source code |
.single_subday_dynamics | Source code |
.speciesCharacterParameterFromSpIndex | Source code |
.speciesNumericParameterFromSpIndex | Source code |
.spwbInput | Source code |
.sumBySpecies | Source code |
.sumSubdailyBySpecies | Source code |
.summarizeCohorts | Source code |
.summarizeSpecies | Source code |
.summarizeStand | Source code |
.summarysim | Source code |
.swrExtinctionProfile | Source code |
.swrheight | Source code |
.temporalSummary | Source code |
.treeBasalArea | Source code |
.unshelteredMidflameWindSpeed | Source code |
.updateBelow | Source code |
.windExtinctionProfile | Source code |
.windSpeedAtCanopyHeight | Source code |
.windSpeedAtHeightOverCanopy | Source code |
.woodyFuelProfile | Source code |
.wue_sim | Source code |
SFM_metric | Man page |
SpParams | Man page |
SpParamsDefinition | Man page |
SpParamsMED | Man page |
aspwb | Man page Source code |
aspwbInput | Man page Source code |
aspwb_day | Man page Source code |
aspwb_day_inner | Man page Source code |
biophysics | Man page |
biophysics_irradianceToPhotonFlux | Man page Source code |
biophysics_leafTemperature | Man page Source code |
biophysics_leafTemperature2 | Man page Source code |
biophysics_leafVapourPressure | Man page Source code |
biophysics_radiationDiurnalPattern | Man page Source code |
biophysics_temperatureDiurnalPattern | Man page Source code |
biophysics_waterDynamicViscosity | Man page Source code |
carbon | Man page |
carbon_carbonCompartments | Man page Source code |
carbon_leafStarchCapacity | Man page Source code |
carbon_leafStructuralBiomass | Man page Source code |
carbon_osmoticWaterPotential | Man page Source code |
carbon_relativeSapViscosity | Man page Source code |
carbon_sapwoodStarchCapacity | Man page Source code |
carbon_sapwoodStructuralBiomass | Man page Source code |
carbon_sapwoodStructuralLivingBiomass | Man page Source code |
carbon_sugarConcentration | Man page Source code |
carbon_sugarStarchDynamicsLeaf | Man page Source code |
carbon_sugarStarchDynamicsStem | Man page Source code |
communication | Man page |
copy_model_output | Man page Source code |
defaultControl | Man page Source code |
defaultManagementArguments | Man page Source code |
defaultManagementFunction | Man page Source code |
defaultSoilParams | Man page Source code |
droughtStress | Man page Source code |
emptyforest | Man page Source code |
evaluation | Man page |
evaluation_metric | Man page Source code |
evaluation_plot | Man page Source code |
evaluation_stats | Man page Source code |
evaluation_table | Man page Source code |
exampleforest | Man page |
exampleforest2 | Man page |
examplemeteo | Man page |
exampleobs | Man page |
extract | Man page Source code |
fireHazard | Man page Source code |
fire_FCCS | Man page Source code |
fire_Rothermel | Man page Source code |
fire_barkThermalDiffusivity | Man page Source code |
fire_behaviour | Man page |
fire_leafThermalFactor | Man page Source code |
fire_necrosisCriticalTemperature | Man page Source code |
fire_necrosisHeight | Man page Source code |
fire_plumeTemperature | Man page Source code |
fire_radialBoleNecrosis | Man page Source code |
fire_severity | Man page |
fordyn | Man page Source code |
forest | Man page |
forest2aboveground | Man page Source code |
forest2belowground | Man page Source code |
forest2growthInput | Man page Source code |
forest2spwbInput | Man page Source code |
forest_mapShrubTable | Man page Source code |
forest_mapTreeTable | Man page Source code |
forest_mapWoodyTables | Man page Source code |
forest_mergeShrubs | Man page Source code |
forest_mergeTrees | Man page Source code |
forest_reduceToDominant | Man page Source code |
forest_simplification | Man page |
fuel_FCCS | Man page Source code |
fuel_properties | Man page |
fuel_stratification | Man page Source code |
fuel_windAdjustmentFactor | Man page Source code |
general_communication_structures | Man page Source code |
growth | Man page Source code |
growthInput | Man page Source code |
growth_day | Man page Source code |
growth_day_inner | Man page Source code |
herb_LAI | Man page Source code |
herb_foliarBiomass | Man page Source code |
herb_fuelLoading | Man page Source code |
herb_values | Man page |
hydraulics_E2psiAboveground | Man page Source code |
hydraulics_E2psiBelowground | Man page Source code |
hydraulics_E2psiNetwork | Man page Source code |
hydraulics_E2psiTwoElements | Man page Source code |
hydraulics_E2psiVanGenuchten | Man page Source code |
hydraulics_E2psiXylem | Man page Source code |
hydraulics_E2psiXylemUp | Man page Source code |
hydraulics_ECrit | Man page Source code |
hydraulics_EVanGenuchten | Man page Source code |
hydraulics_EXylem | Man page Source code |
hydraulics_K2Psi | Man page Source code |
hydraulics_averagePsi | Man page Source code |
hydraulics_averageRhizosphereResistancePercent | Man page Source code |
hydraulics_conductancefunctions | Man page |
hydraulics_correctConductanceForViscosity | Man page Source code |
hydraulics_defoliation | Man page |
hydraulics_findRhizosphereMaximumConductance | Man page Source code |
hydraulics_initSperryNetworks | Man page Source code |
hydraulics_maximumSoilPlantConductance | Man page Source code |
hydraulics_maximumStemHydraulicConductance | Man page Source code |
hydraulics_proportionDefoliationSigmoid | Man page Source code |
hydraulics_proportionDefoliationWeibull | Man page Source code |
hydraulics_psi2K | Man page Source code |
hydraulics_psi2Weibull | Man page Source code |
hydraulics_psiCrit | Man page Source code |
hydraulics_referenceConductivityHeightFactor | Man page Source code |
hydraulics_regulatedPsiTwoElements | Man page Source code |
hydraulics_regulatedPsiXylem | Man page Source code |
hydraulics_rootxylemConductanceProportions | Man page Source code |
hydraulics_scalingconductance | Man page |
hydraulics_soilPlantResistancesSigmoid | Man page Source code |
hydraulics_soilPlantResistancesWeibull | Man page Source code |
hydraulics_supplyFunctionAboveground | Man page Source code |
hydraulics_supplyFunctionBelowground | Man page Source code |
hydraulics_supplyFunctionNetwork | Man page Source code |
hydraulics_supplyFunctionOneXylem | Man page Source code |
hydraulics_supplyFunctionPlot | Man page Source code |
hydraulics_supplyFunctionThreeElements | Man page Source code |
hydraulics_supplyFunctionTwoElements | Man page Source code |
hydraulics_supplyfunctions | Man page |
hydraulics_taperFactorSavage | Man page Source code |
hydraulics_terminalConduitRadius | Man page Source code |
hydraulics_vanGenuchtenConductance | Man page Source code |
hydraulics_vulnerabilityCurvePlot | Man page Source code |
hydraulics_xylemConductance | Man page Source code |
hydraulics_xylemConductanceSigmoid | Man page Source code |
hydraulics_xylemPsi | Man page Source code |
hydrology_herbaceousTranspiration | Man page Source code |
hydrology_infiltration | Man page |
hydrology_infiltrationAmount | Man page Source code |
hydrology_infiltrationBoughton | Man page Source code |
hydrology_infiltrationGreenAmpt | Man page Source code |
hydrology_infiltrationRepartition | Man page Source code |
hydrology_interception | Man page |
hydrology_interceptionPlot | Man page Source code |
hydrology_rainInterception | Man page Source code |
hydrology_rainfallIntensity | Man page Source code |
hydrology_snowMelt | Man page Source code |
hydrology_soilEvaporation | Man page Source code |
hydrology_soilEvaporationAmount | Man page Source code |
hydrology_soilWaterBalance | Man page Source code |
hydrology_verticalInputs | Man page |
hydrology_waterInputs | Man page Source code |
initSureauNetworks | Man page Source code |
instance_communication_structures | Man page Source code |
light_PARcohort | Man page Source code |
light_PARground | Man page Source code |
light_SWRground | Man page Source code |
light_advanced | Man page |
light_basic | Man page |
light_cohortAbsorbedSWRFraction | Man page Source code |
light_cohortSunlitShadeAbsorbedRadiation | Man page Source code |
light_directionalExtinctionCoefficient | Man page Source code |
light_instantaneousLightExtinctionAbsortion | Man page Source code |
light_layerDiffuseIrradianceFraction | Man page Source code |
light_layerDirectIrradianceFraction | Man page Source code |
light_layerSunlitFraction | Man page Source code |
light_leafAngleBetaParameters | Man page Source code |
light_leafAngleCDF | Man page Source code |
light_longwaveRadiationSHAW | Man page Source code |
medfate | Man page |
medfate-package | Man page |
modelInput | Man page |
modifyCohortParams | Man page Source code |
modifyInputParams | Man page Source code |
modifyParams | Man page |
modifySpParams | Man page Source code |
moisture | Man page |
moisture_apoplasticPsi | Man page Source code |
moisture_apoplasticRWC | Man page Source code |
moisture_leafWaterCapacity | Man page Source code |
moisture_pressureVolumeCurvePlot | Man page Source code |
moisture_sapwoodWaterCapacity | Man page Source code |
moisture_symplasticPsi | Man page Source code |
moisture_symplasticRWC | Man page Source code |
moisture_tissueRWC | Man page Source code |
moisture_turgorLossPoint | Man page Source code |
mortality_dailyProbability | Man page Source code |
multiple_runs | Man page Source code |
optimization | Man page |
optimization_evaluation_function | Man page Source code |
optimization_evaluation_multicohort_function | Man page Source code |
optimization_function | Man page Source code |
optimization_multicohort_function | Man page Source code |
pheno_leafDevelopmentStatus | Man page Source code |
pheno_leafSenescenceStatus | Man page Source code |
pheno_updateLeaves | Man page Source code |
pheno_updatePhenology | Man page Source code |
photo | Man page |
photo_GammaTemp | Man page Source code |
photo_JmaxTemp | Man page Source code |
photo_KmTemp | Man page Source code |
photo_VmaxTemp | Man page Source code |
photo_electronLimitedPhotosynthesis | Man page Source code |
photo_leafPhotosynthesisFunction | Man page Source code |
photo_leafPhotosynthesisFunction2 | Man page Source code |
photo_multilayerPhotosynthesisFunction | Man page Source code |
photo_photosynthesis | Man page Source code |
photo_photosynthesisBaldocchi | Man page Source code |
photo_rubiscoLimitedPhotosynthesis | Man page Source code |
photo_sunshadePhotosynthesisFunction | Man page Source code |
plant_ID | Man page Source code |
plant_LAI | Man page Source code |
plant_basalArea | Man page Source code |
plant_characterParameter | Man page Source code |
plant_cover | Man page Source code |
plant_crownBaseHeight | Man page Source code |
plant_crownLength | Man page Source code |
plant_crownRatio | Man page Source code |
plant_density | Man page Source code |
plant_equilibriumLeafLitter | Man page Source code |
plant_equilibriumSmallBranchLitter | Man page Source code |
plant_foliarBiomass | Man page Source code |
plant_fuelLoading | Man page Source code |
plant_height | Man page Source code |
plant_individualArea | Man page Source code |
plant_largerTreeBasalArea | Man page Source code |
plant_parameter | Man page Source code |
plant_phytovolume | Man page Source code |
plant_species | Man page Source code |
plant_speciesName | Man page Source code |
plant_values | Man page |
plant_water | Man page Source code |
plot.fordyn | Man page Source code |
plot.forest | Man page Source code |
plot.growth | Man page Source code |
plot.growth_day | Man page Source code |
plot.pwb | Man page Source code |
plot.pwb_day | Man page Source code |
plot.spwb | Man page Source code |
plot.spwb_day | Man page Source code |
poblet_trees | Man page |
print.summary.forest | Man page Source code |
pwb | Man page Source code |
regeneration | Man page |
regeneration_recruitment | Man page Source code |
regeneration_resprouting | Man page Source code |
regeneration_seedmortality | Man page Source code |
regeneration_seedproduction | Man page Source code |
regeneration_seedrefill | Man page Source code |
resetInputs | Man page Source code |
resistances | Man page Source code |
root | Man page |
root_coarseRootLengths | Man page Source code |
root_coarseRootLengthsFromVolume | Man page Source code |
root_coarseRootSoilVolume | Man page Source code |
root_coarseRootSoilVolumeFromConductance | Man page Source code |
root_conicDistribution | Man page Source code |
root_fineRootAreaIndex | Man page Source code |
root_fineRootBiomass | Man page Source code |
root_fineRootHalfDistance | Man page Source code |
root_fineRootRadius | Man page Source code |
root_fineRootSoilVolume | Man page Source code |
root_horizontalProportions | Man page Source code |
root_individualRootedGroundArea | Man page Source code |
root_ldrDistribution | Man page Source code |
root_rhizosphereMaximumConductance | Man page Source code |
root_specificRootSurfaceArea | Man page Source code |
semi_implicit_integration | Man page Source code |
shinyplot | Man page Source code |
shinyplot.fordyn | Man page Source code |
shinyplot.forest | Man page Source code |
shinyplot.growth | Man page Source code |
shinyplot.growth_day | Man page Source code |
shinyplot.pwb | Man page Source code |
shinyplot.pwb_day | Man page Source code |
shinyplot.spwb | Man page Source code |
shinyplot.spwb_day | Man page Source code |
shrub2forest | Man page Source code |
soil | Man page Source code |
soil_USDAType | Man page Source code |
soil_campbellParamsClappHornberger | Man page Source code |
soil_capacitance | Man page Source code |
soil_conductivity | Man page Source code |
soil_psi | Man page Source code |
soil_psi2cVG | Man page Source code |
soil_psi2kVG | Man page Source code |
soil_psi2thetaSX | Man page Source code |
soil_psi2thetaVG | Man page Source code |
soil_redefineLayers | Man page Source code |
soil_retentionCurvePlot | Man page Source code |
soil_rockWeight2Volume | Man page Source code |
soil_saturatedConductivitySX | Man page Source code |
soil_saturatedWaterDepth | Man page Source code |
soil_temperatureChange | Man page Source code |
soil_temperatureGradient | Man page Source code |
soil_texture | Man page |
soil_thermalCapacity | Man page Source code |
soil_thermalConductivity | Man page Source code |
soil_thermodynamics | Man page |
soil_theta | Man page Source code |
soil_theta2psiSX | Man page Source code |
soil_theta2psiVG | Man page Source code |
soil_thetaFC | Man page Source code |
soil_thetaSAT | Man page Source code |
soil_thetaSATSX | Man page Source code |
soil_thetaWP | Man page Source code |
soil_unsaturatedConductivitySX | Man page Source code |
soil_vanGenuchtenParamsCarsel | Man page Source code |
soil_vanGenuchtenParamsToth | Man page Source code |
soil_water | Man page Source code |
soil_waterExtractable | Man page Source code |
soil_waterFC | Man page Source code |
soil_waterPsi | Man page Source code |
soil_waterSAT | Man page Source code |
soil_waterWP | Man page Source code |
species_LAI | Man page Source code |
species_basalArea | Man page Source code |
species_characterParameter | Man page Source code |
species_cover | Man page Source code |
species_density | Man page Source code |
species_foliarBiomass | Man page Source code |
species_fuelLoading | Man page Source code |
species_parameter | Man page Source code |
species_values | Man page |
spwb | Man page Source code |
spwbInput | Man page Source code |
spwb_day | Man page Source code |
spwb_day_inner | Man page Source code |
stand_LAI | Man page Source code |
stand_basalArea | Man page Source code |
stand_dominantTreeDiameter | Man page Source code |
stand_dominantTreeHeight | Man page Source code |
stand_dominantTreeSpecies | Man page Source code |
stand_foliarBiomass | Man page Source code |
stand_fuelLoading | Man page Source code |
stand_hartBeckingIndex | Man page Source code |
stand_meanTreeHeight | Man page Source code |
stand_quadraticMeanTreeDiameter | Man page Source code |
stand_shrubVolume | Man page Source code |
stand_treeDensity | Man page Source code |
stand_values | Man page |
summary.fordyn | Man page Source code |
summary.forest | Man page Source code |
summary.growth | Man page Source code |
summary.pwb | Man page Source code |
summary.soil | Man page Source code |
summary.spwb | Man page Source code |
sureau_ecos | Man page |
trait_family_means | Man page |
transp_maximumTranspirationModel | Man page Source code |
transp_modes | Man page |
transp_profitMaximization | Man page Source code |
transp_stomatalRegulationPlot | Man page Source code |
transp_stomatalregulation | Man page |
transp_transpirationGranier | Man page Source code |
transp_transpirationSperry | Man page Source code |
transp_transpirationSureau | Man page Source code |
tree2forest | Man page Source code |
vprofile_PARExtinction | Man page Source code |
vprofile_SWRExtinction | Man page Source code |
vprofile_fuelBulkDensity | Man page Source code |
vprofile_leafAreaDensity | Man page Source code |
vprofile_rootDistribution | Man page Source code |
vprofile_windExtinction | Man page Source code |
waterUseEfficiency | Man page Source code |
wind | Man page |
wind_canopyTurbulence | Man page Source code |
wind_canopyTurbulenceModel | Man page Source code |
woodformation | Man page |
woodformation_growRing | Man page Source code |
woodformation_initRing | Man page Source code |
woodformation_relativeExpansionRate | Man page Source code |
woodformation_relativeGrowthRate | Man page Source code |
woodformation_temperatureEffect | Man page Source code |
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