plot_waasby: Plot WAASBY values for genotype ranking

In metan: Multi Environment Trials Analysis

Plot WAASBY values for genotype ranking

Description

Plot heat maps with genotype ranking in two ways.

Usage

plot_waasby(
  x,
  var = 1,
  export = F,
  file.type = "pdf",
  file.name = NULL,
  plot_theme = theme_metan(),
  width = 6,
  height = 6,
  size.shape = 3.5,
  size.tex.lab = 12,
  col.shape = c("blue", "red"),
  x.lab = "WAASBY",
  y.lab = "Genotypes",
  x.breaks = waiver(),
  resolution = 300,
  ...
)

Arguments

x	The WAASBY object
var	The variable to plot. Defaults to var = 1 the first variable of x.
export	Export (or not) the plot. Default is T.
file.type	The type of file to be exported. Default is pdf, Graphic can also be exported in *.tiff format by declaring file.type = "tiff".
file.name	The name of the file for exportation, default is NULL, i.e. the files are automatically named.
plot_theme	The graphical theme of the plot. Default is plot_theme = theme_metan(). For more details, see ggplot2::theme().
width	The width "inch" of the plot. Default is 8.
height	The height "inch" of the plot. Default is 7.
size.shape	The size of the shape in the plot. Default is 3.5.
size.tex.lab	The size of the text in axis text and labels.
col.shape	A vector of length 2 that contains the color of shapes for genotypes above and below of the mean, respectively. Default is c("blue", "red").
x.lab	The label of the x axis in the plot. Default is "WAASBY".
y.lab	The label of the y axis in the plot. Default is "Genotypes".
x.breaks	The breaks to be plotted in the x-axis. Default is authomatic breaks. New arguments can be inserted as x.breaks = c(breaks)
resolution	The resolution of the plot. Parameter valid if file.type = "tiff" is used. Default is 300 (300 dpi)
...	Currently not used.

Value

An object of class gg, ggplot.

Author(s)

Tiago Olivoto [e-mail]

See Also

plot_scores()

Examples

library(metan)
library(ggplot2)
waasby <- waasb(data_ge,
                resp = GY,
                gen = GEN,
                env = ENV,
                rep = REP)
waasby2 <- waas(data_ge,
                resp = GY,
                gen = GEN,
                env = ENV,
                rep = REP)
plot_waasby(waasby)
plot_waasby(waasby2) +
            theme_gray() +
            theme(legend.position = "bottom",
                  legend.background = element_blank(),
                  legend.title = element_blank(),
                  legend.direction = "horizontal")

metan documentation built on March 7, 2023, 5:34 p.m.