Implementation of various statistical models for multivariate event history data. Including multivariate cumulative incidence models, and bivariate random effects probit models (Liability models). Also contains two-stage binomial modelling that can do pairwise odds-ratio dependence modelling based marginal logistic regression models. This is an alternative to the alternating logistic regression approach (ALR).

Author | Klaus K. Holst and Thomas Scheike |

Date of publication | 2015-05-29 07:36:10 |

Maintainer | Klaus K. Holst <klaus@holst.it> |

License | GPL (>= 2) |

Version | 1.1.1 |

http://lava.r-forge.r-project.org/ |

**aalenfrailty:** Aalen frailty model

**back2timereg:** Convert to timereg object

**bicomprisk:** Estimation of concordance in bivariate competing risks data

**binomial.twostage:** Fits Clayton-Oakes or bivariate Plackett (OR) models for...

**biprobit:** Bivariate Probit model

**blocksample:** Block sampling

**bptwin:** Liability model for twin data

**casewise:** Estimates the casewise concordance based on Concordance and...

**casewise.test:** Estimates the casewise concordance based on Concordance and...

**ClaytonOakes:** Clayton-Oakes model with piece-wise constant hazards

**concordance:** Concordance Computes concordance and casewise concordance

**cor.cif:** Cross-odds-ratio, OR or RR risk regression for competing...

**Dbvn:** Derivatives of the bivariate normal cumulative distribution...

**dermalridges:** Dermal ridges data (families)

**dermalridgesMZ:** Dermal ridges data (monozygotic twins)

**divide.conquer:** Split a data set and run function

**divide.conquer.timereg:** Split a data set and run function from timereg and aggregate

**easy.binomial.twostage:** Fits two-stage binomial for describing depdendence in...

**easy.twostage:** Fits two-stage model for describing depdendence in survival...

**Event:** Event history object

**eventpois:** Extract survival estimates from lifetable analysis

**fast.approx:** Fast approximation

**fast.pattern:** Fast pattern

**fast.reshape:** Fast reshape Simple reshape/tranpose of data

**Grandom.cif:** Additive Random effects model for competing risks data for...

**internal:** For internal use

**ipw:** Inverse Probability of Censoring Weights

**ipw2:** Inverse Probability of Censoring Weights

**lifetable.matrix:** Life table

**mena:** Menarche data set

**mets-package:** Analysis of Multivariate Events

**migr:** Migraine data

**multcif:** Multivariate Cumulative Incidence Function example data set

**np:** np data set

**phreg:** Fast Cox PH regression

**plack.cif:** plack Computes concordance for or.cif based model, that is...

**printcasewisetest:** prints Concordance test

**prt:** Prostate data set

**random.cif:** Random effects model for competing risks data

**simAalenFrailty:** Simulate from the Aalen Frailty model

**simClaytonOakes:** Simulate from the Clayton-Oakes frailty model

**simClaytonOakesWei:** Simulate from the Clayton-Oakes frailty model

**summary.cor:** Summary for dependence models for competing risks

**test.conc:** Concordance test Compares two concordance estimates

**tetrachoric:** Estimate parameters from odds-ratio

**twinbmi:** BMI data set

**twin.clustertrunc:** Estimation of twostage model with cluster truncation in...

**twinlm:** Classic twin model for quantitative traits

**twinsim:** Simulate twin data

**twinstut:** Stutter data set

**twostage:** Fits Clayton-Oakes or bivariate Plackett models for bivariate...

mets

mets/inst

mets/inst/misc

mets/inst/misc/ipw.png

mets/inst/misc/cifMZ.png

mets/inst/misc/pcif2.png

mets/inst/misc/sim-cens-ts.r

mets/inst/misc/cumh.png

mets/inst/misc/obs

mets/inst/misc/obs/workshop.R

mets/inst/misc/obs/workshop-ts.R

mets/inst/misc/obs/workshop.org

mets/inst/misc/obs/workshop.html

mets/inst/misc/workshop-src.org

mets/inst/misc/conc2.png

mets/inst/misc/pcifl.png

mets/inst/misc/twinbmi.R

mets/inst/misc/run-all.R

mets/inst/misc/concordance.png

mets/inst/misc/pcif.png

mets/inst/misc/orgmode1.css

mets/inst/misc/mena.html

mets/inst/misc/workshop-run.html

mets/inst/misc/casewisea.png

mets/inst/misc/cif2.png

mets/inst/misc/orgmode2.css

mets/inst/misc/sim-nordic-twin.r

mets/inst/misc/workshop.html

mets/inst/binfam.rda

mets/inst/phenotype1.rda

mets/inst/twinbmi2.rda

mets/inst/mets1.png

mets/inst/binomialtwostage.R

mets/inst/menalong.rda

mets/tests

mets/tests/testthat

mets/tests/testthat/test_reshape.R

mets/tests/testthat/test_approx.R

mets/tests/testthat/test_claytonoakes.R

mets/tests/test-all.R

mets/src

mets/src/mvn.cpp

mets/src/Makevars

mets/src/mvt.f

mets/src/mvn.h

mets/src/cor.cpp

mets/src/fastcox.h

mets/src/tvpackAux.c

mets/src/tools.h

mets/src/tvpack.f

mets/src/tools.cpp

mets/src/fastcox.cpp

mets/src/plackettMLE.cpp

mets/src/prop-odd.cpp

mets/src/binomial-plackett.cpp

mets/src/claytonoakes.cpp

mets/src/clusterindex.cpp

mets/src/aalenfrailty.cpp

mets/src/Makevars.win

mets/src/RcppExports.cpp

mets/src/biprobit.cpp

mets/src/randomF77.c

mets/NAMESPACE

mets/demo

mets/demo/models.R

mets/demo/tools.R

mets/demo/00Index

mets/demo/mets.R

mets/NEWS

mets/data

mets/data/mena.rda

mets/data/dermalridgesMZ.rda

mets/data/migr.txt.gz

mets/data/dermalridges.rda

mets/data/np.txt.gz

mets/data/multcif.txt.gz

mets/data/twinstut.txt.gz

mets/data/datalist

mets/data/twinbmi.txt.gz

mets/data/prt.rda

mets/R

mets/R/aalenfrailty.R
mets/R/pmvn.R
mets/R/onload.R
mets/R/predict.biprobit.R
mets/R/plot.bptwin.R
mets/R/utils.R
mets/R/plotcr.R
mets/R/sim.clayton.oakes.R
mets/R/twinsim.R
mets/R/Dbvn.R
mets/R/sim-nordic-twin.R
mets/R/twinlm2.R
mets/R/jumptimes.R
mets/R/cor.R
mets/R/fastreshape.R
mets/R/event.R
mets/R/cumh.R
mets/R/twinlm.time.R
mets/R/biprobit.time.R
mets/R/casewise.R
mets/R/lifetable.R
mets/R/score.biprobit.R
mets/R/summary.biprobit.R
mets/R/bicomprisksim.R
mets/R/phreg.R
mets/R/twinlm.R
mets/R/clusterindex-reshape.R
mets/R/npc.R
mets/R/bicomprisk.R
mets/R/claytonakes.R
mets/R/summary.bptwin.R
mets/R/mets-package.R
mets/R/methodstwinlm.R
mets/R/procformula.R
mets/R/blocksample.R
mets/R/normal0.R
mets/R/uniprobit.R
mets/R/twostage.R
mets/R/prop-odds.R
mets/R/RcppExports.R
mets/R/sim.bptwin.R
mets/R/ipw.R
mets/R/print.biprobit.R
mets/R/surv.boxarea.R
mets/R/coef.biprobit.R
mets/R/exmarg.R
mets/R/fastpattern.R
mets/R/print.summary.biprobit.R
mets/R/fastapprox.R
mets/R/phreg.par.R
mets/R/biprobit.R
mets/R/logLik.biprobit.R
mets/R/bptwin2.R
mets/R/tetrachor.R
mets/R/biprobit.strata.R
mets/R/twin.clustertrunc.r

mets/R/bptwin.R
mets/R/divide.conquer.R
mets/R/binomial.twostage.R
mets/R/vcov.biprobit.R
mets/MD5

mets/DESCRIPTION

mets/man

mets/man/fast.approx.Rd
mets/man/lifetable.matrix.Rd
mets/man/tetrachoric.Rd
mets/man/twin.clustertrunc.Rd
mets/man/Dbvn.Rd
mets/man/ipw2.Rd
mets/man/mena.Rd
mets/man/casewise.test.Rd
mets/man/test.conc.Rd
mets/man/multcif.Rd
mets/man/mets-package.Rd
mets/man/simClaytonOakesWei.Rd
mets/man/aalenfrailty.Rd
mets/man/internal.Rd
mets/man/back2timereg.Rd
mets/man/twinlm.Rd
mets/man/plack.cif.Rd
mets/man/simAalenFrailty.Rd
mets/man/printcasewisetest.Rd
mets/man/twinstut.Rd
mets/man/eventpois.Rd
mets/man/cor.cif.Rd
mets/man/divide.conquer.timereg.Rd
mets/man/Event.Rd
mets/man/bptwin.Rd
mets/man/twinbmi.Rd
mets/man/easy.twostage.Rd
mets/man/casewise.Rd
mets/man/prt.Rd
mets/man/migr.Rd
mets/man/random.cif.Rd
mets/man/summary.cor.Rd
mets/man/binomial.twostage.Rd
mets/man/simClaytonOakes.Rd
mets/man/ClaytonOakes.Rd
mets/man/concordance.Rd
mets/man/dermalridgesMZ.Rd
mets/man/fast.reshape.Rd
mets/man/dermalridges.Rd
mets/man/Grandom.cif.Rd
mets/man/blocksample.Rd
mets/man/phreg.Rd
mets/man/easy.binomial.twostage.Rd
mets/man/biprobit.Rd
mets/man/twostage.Rd
mets/man/twinsim.Rd
mets/man/ipw.Rd
mets/man/divide.conquer.Rd
mets/man/np.Rd
mets/man/fast.pattern.Rd
mets/man/bicomprisk.Rd
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