Analysis of Multivariate Event Times

aalenfrailty | Aalen frailty model |

aalenMets | Fast additive hazards model with robust standard errors |

back2timereg | Convert to timereg object |

base1cumhaz | rate of CRBSI for HPN patients of Copenhagen |

base44cumhaz | rate of Occlusion/Thrombosis complication for catheter of HPN... |

base4cumhaz | rate of Mechanical (hole/defect) complication for catheter of... |

basehazplot.phreg | Plotting the baslines of stratified Cox |

bicomprisk | Estimation of concordance in bivariate competing risks data |

BinAugmentCifstrata | Augmentation for Binomial regression based on stratified... |

binomial.twostage | Fits Clayton-Oakes or bivariate Plackett (OR) models for... |

binreg | Binomial Regression for censored competing risks data |

binregATE | Average Treatment effect for censored competing risks data... |

binregCasewise | Estimates the casewise concordance based on Concordance and... |

biprobit | Bivariate Probit model |

blocksample | Block sampling |

bmt | The Bone Marrow Transplant Data |

Bootphreg | Wild bootstrap for Cox PH regression |

bptwin | Liability model for twin data |

casewise | Estimates the casewise concordance based on Concordance and... |

casewise.test | Estimates the casewise concordance based on Concordance and... |

cif | Cumulative incidence with robust standard errors |

cifreg | CIF regression |

ClaytonOakes | Clayton-Oakes model with piece-wise constant hazards |

cluster.index | Finds subjects related to same cluster |

concordanceCor | Concordance Computes concordance and casewise concordance |

cor.cif | Cross-odds-ratio, OR or RR risk regression for competing... |

count.history | Counts the number of previous events of two types for... |

covarianceRecurrent | Estimation of covariance for bivariate recurrent events with... |

daggregate | aggregating for for data frames |

Dbvn | Derivatives of the bivariate normal cumulative distribution... |

dby | Calculate summary statistics grouped by |

dcor | summary, tables, and correlations for data frames |

dcut | Cutting, sorting, rm (removing), rename for data frames |

dermalridges | Dermal ridges data (families) |

dermalridgesMZ | Dermal ridges data (monozygotic twins) |

diabetes | The Diabetic Retinopathy Data |

divide.conquer | Split a data set and run function |

divide.conquer.timereg | Split a data set and run function from timereg and aggregate |

dlag | Lag operator |

doubleFGR | Double CIF Fine-Gray model with two causes |

dprint | list, head, print, tail |

drcumhaz | Rate for leaving HPN program for patients of Copenhagen |

dreg | Regression for data frames with dutility call |

drelevel | relev levels for data frames |

dsort | Sort data frame |

dspline | Simple linear spline |

dtable | tables for data frames |

dtransform | Transform that allows condition |

easy.binomial.twostage | Fits two-stage binomial for describing depdendence in... |

easy.survival.twostage | Wrapper for easy fitting of Clayton-Oakes or bivariate... |

Effbinreg | Efficient IPCW for binary data |

EVaddGam | Relative risk for additive gamma model |

eventpois | Extract survival estimates from lifetable analysis |

EventSplit | Event split with two time-scales, time and gaptime |

familycluster.index | Finds all pairs within a cluster (family) |

familyclusterWithProbands.index | Finds all pairs within a cluster (famly) with the proband... |

fast.approx | Fast approximation |

fast.pattern | Fast pattern |

fast.reshape | Fast reshape |

FG_AugmentCifstrata | Augmentation for Fine-Gray model based on stratified NPMLE... |

ghaplos | ghaplos haplo-types for subjects of haploX data |

gofG.phreg | Stratified baseline graphical GOF test for Cox covariates in... |

gofM.phreg | GOF for Cox covariates in PH regression |

gof.phreg | GOF for Cox PH regression |

gofZ.phreg | GOF for Cox covariates in PH regression |

Grandom.cif | Additive Random effects model for competing risks data for... |

hapfreqs | hapfreqs data set |

haplo.surv.discrete | Discrete time to event haplo type analysis |

haploX | haploX covariates and response for haplo survival discrete... |

internal | For internal use |

interval.logitsurv.discrete | Discrete time to event interval censored data |

ipw | Inverse Probability of Censoring Weights |

ipw2 | Inverse Probability of Censoring Weights |

km | Kaplan-Meier with robust standard errors |

lifecourse | Life-course plot |

lifetable.matrix | Life table |

LinSpline | Simple linear spline |

logitSurv | Proportional odds survival model |

mediatorSurv | Mediation analysis in survival context |

medweight | Computes mediation weights |

melanoma | The Melanoma Survival Data |

mena | Menarche data set |

mets.options | Set global options for 'mets' |

mets-package | Analysis of Multivariate Events |

migr | Migraine data |

mlogit | Multinomial regression based on phreg regression |

multcif | Multivariate Cumulative Incidence Function example data set |

np | np data set |

phreg | Fast Cox PH regression |

phregR | Fast Cox PH regression and calculations done in R to make... |

plack.cif | plack Computes concordance for or.cif based model, that is... |

pmvn | Multivariate normal distribution function |

predict.phreg | Predictions from proportional hazards model |

print.casewise | prints Concordance test |

prob.exceed.recurrent | Estimation of probability of more that k events for recurrent... |

prt | Prostate data set |

random.cif | Random effects model for competing risks data |

rchaz | Simulation of Piecewise constant hazard model (Cox). |

rcrisk | Simulation of Piecewise constant hazard models with two... |

recreg | Recurrent events regression with terminal event |

recurrentMarginal | Fast recurrent marginal mean when death is possible |

reexports | Objects exported from other packages |

resmeanATE | Average Treatment effect for Restricted Mean for censored... |

resmeanIPCW | Restricted IPCW mean for censored survival data |

resmean.phreg | Restricted mean for stratified Kaplan-Meier or Cox model with... |

rpch | Piecewise constant hazard distribution |

simAalenFrailty | Simulate from the Aalen Frailty model |

sim.cause.cox | Simulation of cause specific from Cox models. |

sim.cif | Simulation of output from Cumulative incidence regression... |

simClaytonOakes | Simulate from the Clayton-Oakes frailty model |

simClaytonOakesWei | Simulate from the Clayton-Oakes frailty model |

sim.cox | Simulation of output from Cox model. |

simMultistate | Simulation of illness-death model |

simRecurrent | Simulation of recurrent events data based on cumulative... |

simRecurrentII | Simulation of recurrent events data based on cumulative... |

simRecurrentTS | Simulation of recurrent events data based on cumulative... |

summary.cor | Summary for dependence models for competing risks |

survivalG | G-estimator for Cox and Fine-Gray model |

survival.iterative | Survival model for multivariate survival data |

survival.twostage | Twostage survival model for multivariate survival data |

survival.twostageCC | Twostage survival model for multivariate survival data |

test.conc | Concordance test Compares two concordance estimates |

tetrachoric | Estimate parameters from odds-ratio |

TRACE | The TRACE study group of myocardial infarction |

ttpd | ttpd discrete survival data on interval form |

twinbmi | BMI data set |

twin.clustertrunc | Estimation of twostage model with cluster truncation in... |

twinlm | Classic twin model for quantitative traits |

twinsim | Simulate twin data |

twinstut | Stutter data set |

twostageMLE | Twostage survival model fitted by pseudo MLE |

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