allmeds: Gets matrices of medians for each individual sample for all...

In mineCitrus: Extract and Analyze Median Molecule Intensity from 'citrus' Output

Description

Gets matrices of medians for each individual sample for all measured parameters for all clusters

Usage

allmeds(citrus.combinedFCSSet, citrus.foldClustering, citrus.foldFeatureSet)

Arguments

citrus.combinedFCSSet	loaded from citrusClustering.RData file generated by Citrus run
citrus.foldClustering	loaded from citrusClustering.RData file generated by Citrus run
citrus.foldFeatureSet	computed from first two variables using citrus.calculateFoldFeatureSet function from citrus package

Value

Returns a list with each element corresponding to a matrix (rows as samples, columns as measured parameters) for a different cluster (for the minimum threshold specified)

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)

mineCitrus documentation built on May 2, 2019, 1:27 p.m.