plotdif2: Plot dot plots of features where one cluster is significantly...

In mineCitrus: Extract and Analyze Median Molecule Intensity from 'citrus' Output

Description

Plot dot plots of features where one cluster is significantly different from the reference cluster

Usage

plotdif2(BJHdf, anovadata, strat)

Arguments

BJHdf	results of a call to findsig
anovadata	results of call to processforanova
strat	clusterIDs for clusters that are stratifying

Value

Dot plots for all features where one cluster is significantly different from the reference cluster

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
filteredmeds<-findclust(data=meds,clusters=c(19999,19972,19988))
meds2<-filterMarker(clustdat=filteredmeds,markers=c(2,3))
foranova<-processforanova(filtereddata=meds2)
ttests<-posthoc(processedDat=foranova,clustIDdif=19999)
sig<-findSig(posHocRes=ttests)
graphs<-plotdif2(BJHdf=sig,anovadata=foranova,strat=19999)

mineCitrus documentation built on May 2, 2019, 1:27 p.m.