difMarkerPlots2: Plot dot plots of features where one cluster is significantly...

In mineCitrus: Extract and Analyze Median Molecule Intensity from 'citrus' Output

Description

Plot dot plots of features where one cluster is significantly different from the reference cluster without processing data before hand

Usage

difMarkerPlots2(data, clusters, markers, diffclust, strat)

Arguments

data	output from call to allmeds function
clusters	clusterIDs of the desired clusters to compare and plot
markers	indices of the columns of the data matrix for features to be analyse
diffclust	clusterID of for cluster to statisticaly compare others to
strat	clusterIDs for stratifying clusters as indicated by Citrus results

Value

Dot plots for all features where one cluster is significantly different from the reference cluster

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
graphs<-difMarkerPlots2(data=meds,clusters=c(19999,19972,19988),markers=c(2,3),
                        diffclust=19999,strat=19999)

mineCitrus documentation built on May 2, 2019, 1:27 p.m.