filterMarker: Filters list of data matrices with columns corresponding to...

In mineCitrus: Extract and Analyze Median Molecule Intensity from 'citrus' Output

Description

Filters list of data matrices with columns corresponding to the measured parameters of interest

Usage

filterMarker(clustdat, markers)

Arguments

clustdat	a list of data matrices with list elements corresponding to clusters and matrices of intensities of measured parameters
markers	Indices of the columns of parmeters to keep

Value

A list of data matrices with columns of data matrices only corresponding to measured parameters of interest

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
meds2<-filterMarker(clustdat=meds,markers=c(2,3))

mineCitrus documentation built on May 2, 2019, 1:27 p.m.