sortmat: Reorders to rows (corresponding to different clusters) of a...

In mineCitrus: Extract and Analyze Median Molecule Intensity from 'citrus' Output

Description

Reorders to rows (corresponding to different clusters) of a matrix of medians to a desired order

Usage

sortmat(mat, desiredorder)

Arguments

mat	matrix of median data
desiredorder	row labels from matrix in desired order

Value

Returns a matrix with rows rearranged in desired order

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
medians<-clustermeds(citrus.foldFeatureSet=citrus.foldFeatureSet,
                     citrus.foldClustering=citrus.foldClustering,
                     medsofinterest=c("Red","Blue"),
                     citrus.combinedFCSSet=citrus.combinedFCSSet)
names<-rownames(medians)
names<-names[c(31,1:30)]
sortedmedians<-sortmat(mat=medians,desiredorder=names)

mineCitrus documentation built on May 2, 2019, 1:27 p.m.