posthoc: Runs ANOVA and t-tests comparing clusters and markers in...

In mineCitrus: Extract and Analyze Median Molecule Intensity from 'citrus' Output

Description

Runs ANOVA and t-tests comparing clusters and markers in clusters

Usage

posthoc(processedDat, clustIDdif)

Arguments

processedDat	data that has been processed using the processforanova function
clustIDdif	ID number of the cluster to compare the others to

Value

A list of t-test results for each of the comparisons

Examples

library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
meds<-allmeds(citrus.combinedFCSSet=citrus.combinedFCSSet,
              citrus.foldClustering=citrus.foldClustering,
              citrus.foldFeatureSet=citrus.foldFeatureSet)
filteredmeds<-findclust(data=meds,clusters=c(19999,19972,19988))
meds2<-filterMarker(clustdat=filteredmeds,markers=c(2,3))
foranova<-processforanova(filtereddata=meds2)
ttests<-posthoc(processedDat=foranova,clustIDdif=19999)

mineCitrus documentation built on May 2, 2019, 1:27 p.m.