Description Usage Arguments Value Examples
Gets matrix of medians for desired measured features for all clusters meeting threshold requirements specified in Citrus
1 2 | clustermeds(citrus.foldFeatureSet, citrus.foldClustering, medsofinterest,
citrus.combinedFCSSet)
|
citrus.foldFeatureSet |
computed from first two variables using citrus.calculateFoldFeatureSet function from citrus package |
citrus.foldClustering |
loaded from citrusClustering.RData file generated by Citrus run |
medsofinterest |
The names of the columns from citrus.combinedFCSSet$data of interest to extract medians for |
citrus.combinedFCSSet |
loaded from citrusClustering.RData file generated by Citrus run |
Returns a matrix with columns corresponding to selected features and rows corresponding to samples
1 2 3 4 5 6 7 8 | library(mineCitrus)
data("citrus.combinedFCSSet")
data("citrus.foldClustering")
data("citrus.foldFeatureSet")
medians<-clustermeds(citrus.foldFeatureSet=citrus.foldFeatureSet,
citrus.foldClustering=citrus.foldClustering,
medsofinterest=c("Red","Blue"),
citrus.combinedFCSSet=citrus.combinedFCSSet)
|
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