gseq.extract: Returns DNA sequences
In misha: Toolkit for Analysis of Genomic Data
gseq.extract R Documentation
Returns DNA sequences
Description
Returns DNA sequences for given intervals
Usage
gseq.extract(intervals = NULL)
Arguments
intervals
intervals for which DNA sequence is returned
Details
This function returns an array of sequence strings for each interval from
'intervals'. If intervals contain an additional 'strand' column and its
value is '-1', the reverse-complementary sequence is returned.
Value
An array of character strings representing DNA sequence.
See Also
gextract
Examples
gdb.init_examples()
intervs <- gintervals(c(1, 2), 10000, 10020)
gseq.extract(intervs)
misha documentation built on Sept. 14, 2023, 5:08 p.m.
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| gseq.extract | R Documentation |
Returns DNA sequences
Description
Returns DNA sequences for given intervals
Usage
gseq.extract(intervals = NULL)
Arguments
intervals |
intervals for which DNA sequence is returned |
Details
This function returns an array of sequence strings for each interval from 'intervals'. If intervals contain an additional 'strand' column and its value is '-1', the reverse-complementary sequence is returned.
Value
An array of character strings representing DNA sequence.
See Also
gextract
Examples
gdb.init_examples()
intervs <- gintervals(c(1, 2), 10000, 10020)
gseq.extract(intervs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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