gtrack.create_sparse: Creates a 'Sparse' track from intervals and values

In misha: Toolkit for Analysis of Genomic Data

Creates a 'Sparse' track from intervals and values

Description

Creates a 'Sparse' track from intervals and values.

Usage

gtrack.create_sparse(
  track = NULL,
  description = NULL,
  intervals = NULL,
  values = NULL
)

Arguments

track	track name
description	a character string description
intervals	a set of one-dimensional intervals
values	an array of numeric values - one for each interval

Details

This function creates a new 'Sparse' track with values at given intervals. 'description' is added as a track attribute.

Value

None.

See Also

gtrack.create, gtrack.2d.create, gtrack.smooth, gtrack.modify, gtrack.rm, gtrack.info, gdir.create

Examples

gdb.init_examples()
intervs <- gintervals.load("annotations")
gtrack.create_sparse(
    "test_sparse", "Test track", intervs,
    1:dim(intervs)[1]
)
gextract("test_sparse", .misha$ALLGENOME)
gtrack.rm("test_sparse", force = TRUE)

misha documentation built on Sept. 14, 2023, 5:08 p.m.