read_nm_table: Read NONMEM table files produced.
In ncappc: NCA Calculations and Population Model Diagnosis

Description Usage Arguments Details Value

The function reads in NONMEM table files. The files can be created from the $EST line or from the $SIM line in a NONMEM model file.

1 2	read_nm_table(nm_table, only_obs = FALSE, method = "default", quiet = TRUE, sim_num = FALSE, sim_name = "NSIM")

`nm_table`	The NONMEM table file to read. A text string. If `dplyr` and `readr` are available and `method="default"` or `method="readr_*"` then `nm_table` can either a path to a file, a connection, or literal data (either a single string or a raw vector). Files ending in .gz, .bz2, .xz, or .zip will be automatically uncompressed. Files starting with http://, https://, ftp://, or ftps:// will be automatically downloaded. Remote gz files can also be automatically downloaded & decompressed.
`only_obs`	Should the non-observation lines in the data set be removed? Currently filtered using the expected `MDV` column. `TRUE` or `FALSE`.
`method`	Can be one of `default`, `readr_1`, `readr_2`, `readr_3`, `slow`. `readr_1` should be fastest. All but `slow` require `dplyr` and `readr` (version >= 0.2.2).
`quiet`	Should there be verbose messages about what the function is doing?
`sim_num`	Should the function add a column to the returned data frame that identifies the simulation number (if present)?
`sim_name`	The name of the resulting column in the returned data frame if `sim_num` is true.

Currently the function searches the $TABLE for multiple header lines, and uses that to identify multiple simulations. The function expects at least one header line (NOHEADER option is not allowed in NONMEM table files).

Returns a data frame of the simulated table with an added column for the simulation number. The data frame is given class c("tbl_df", "tbl", "data.frame") for easy use with dplyr.

ncappc documentation built on May 1, 2019, 7:31 p.m.