mapImage: Add an Image to a Map

In oce: Analysis of Oceanographic Data

Add an Image to a Map

Description

Plot an image on an existing map that was created with mapPlot().

Usage

mapImage(
  longitude,
  latitude,
  z,
  zlim,
  zclip = FALSE,
  breaks,
  col,
  colormap,
  border = NA,
  lwd = par("lwd"),
  lty = par("lty"),
  missingColor = NA,
  filledContour = FALSE,
  gridder = "binMean2D",
  debug = getOption("oceDebug")
)

Arguments

longitude	numeric vector of longitudes corresponding to z matrix.
latitude	numeric vector of latitudes corresponding to z matrix.
z	numeric matrix to be represented as an image.
zlim	limit for z (color).
zclip	A logical value, TRUE indicating that out-of-range z values should be painted with missingColor and FALSE indicating that these values should be painted with the nearest in-range color. If zlim is given then its min and max set the range. If zlim is not given but breaks is given, then the min and max of breaks sets the range used for z. If neither zlim nor breaks is given, clipping is not done, i.e. the action is as if zclip were FALSE.
breaks	The z values for breaks in the color scheme. If this is of length 1, the value indicates the desired number of breaks, which is supplied to pretty(), in determining clean break points.
col	Either a vector of colors corresponding to the breaks, of length 1 plus the number of breaks, or a function specifying colors, e.g. oce.colorsViridis() for the Viridis scheme.
colormap	optional colormap, as created by colormap(). If a colormap is provided, then its properties takes precedence over breaks, col, missingColor, and zclip specified to mapImage.
border	Color used for borders of patches (passed to polygon()); the default NA means no border.
lwd	line width, used if borders are drawn.
lty	line type, used if borders are drawn.
missingColor	a color to be used to indicate missing data, or NA to skip the drawing of such regions (which will retain whatever material has already been drawn at the regions).
filledContour	an indication of whether to use filled contours. This may be FALSE (the default), TRUE, or a positive numerical value. If FALSE, then polygons are used. Otherwise, the longitude-latitude values are transformed to x-y values, which will not be on a grid and thus will require gridding so that .filled.contour() can plot the filled contours. The method used for gridding is set by the gridder parameter (see next item). If filledContour is TRUE, then the grid is constructed with the aim of having approximately 3 of the projected x-y points in each cell. That can leave some cells unoccupied, yielding blanks in the drawn image. There are two ways around that. First, the gridder can be set up to fill gaps. Second, a numerical value can be used for filledContour. For example, using filledContour equal to 1.5 will increase grid width and height by a factor of 1.5, which may be enough to fill all the gaps, depending on the projection and the area shown.
gridder	specification of how gridding is to be done, used only if filledContour is TRUE. The value of gridder may "binMean2D", which is the default, "interp", or a function. In the first two cases, the gridding is done with either binMean2D() or interp::interp(), respectively. For more on the last case, see “Details”.
debug	an integer specifying whether debugging information is to be printed during the processing. This is a general parameter that is used by many oce functions. Generally, setting debug=0 turns off the printing, while higher values suggest that more information be printed. If one function calls another, it usually reduces the value of debug first, so that a user can often obtain deeper debugging by specifying higher debug values.

Details

Image data are on a regular grid in lon-lat space, but not in the projected x-y space. This means that image() cannot be used. Instead, there are two approaches, depending on the value of filledContour.

If filledContour is FALSE, the image "pixels" are drawn with polygon(). This can be prohibitively slow for fine grids.

However, if filledContour is TRUE, then the "pixels" are remapped into a regular grid and then displayed with .filled.contour(). The remapping starts by converting the regular lon-lat grid to an irregular x-y grid using lonlat2map(). This irregular grid is then interpolated onto a regular x-y grid in accordance with the gridder parameter. If gridder values of "binMean2D" and "interp" do not produce satisfactory results, advanced users might wish to supply a function to do the gridding according to their own criteria. The function must have as its first 5 arguments (1) an x vector, (2) a y vector, (3) a z matrix that corresponds to x and y in the usual way, (4) a vector holding the desired x grid, and (5) a vector holding the desired y grid. The return value must be a list containing items named xmids, ymids and result. To understand the meaning of the parameters and return values, consult the documentation for binMean2D(). Here is an example of a scheme that will fill data gaps of 1 or 2 cells:

g <- function(...) binMean2D(..., fill = TRUE, fillgap = 2)
mapImage(..., gridder = g, ...)

Historical Notes

Until oce 1.7.4, the gridder argument could be set to "akima", which used the akima package. However, that package is not released with a FOSS license, so CRAN requested a change to interp. Note that drawImage() intercepts the errors that sometimes get reported by interp::interp().

Sample of Usage

library(oce)
data(coastlineWorld)
data(topoWorld)

# Northern polar region, with color-coded bathymetry
par(mfrow = c(1, 1), mar = c(2, 2, 1, 1))
cm <- colormap(zlim = c(-5000, 0), col = oceColorsGebco)
drawPalette(colormap = cm)
mapPlot(coastlineWorld,
    projection = "+proj=stere +lat_0=90",
    longitudelim = c(-180, 180), latitudelim = c(70, 110)
)
# Uncomment one of the next four blocks.  See
# https://dankelley.github.io/dek_blog/2024/03/07/mapimage.html
# for illustrations.

# Method 1: the default, using polygons for lon-lat patches
mapImage(topoWorld, colormap = cm)

# Method 2: filled contours, with ugly missing-data traces
# mapImage(topoWorld, colormap = cm, filledContour = TRUE)

# Method 3: filled contours, with a double-sized grid cells
# mapImage(topoWorld, colormap = cm, filledContour = 2)

# Method 4: filled contours, with a gap-filling gridder)
# g <- function(...) binMean2D(..., fill = TRUE, fillgap = 2)
# mapImage(topoWorld, colormap = cm, filledContour = TRUE, gridder = g)

mapGrid(15, 15, polarCircle = 1, col = gray(0.2))
mapPolygon(coastlineWorld[["longitude"]],
    coastlineWorld[["latitude"]],
    col = "tan"
)

Author(s)

Dan Kelley

See Also

A map must first have been created with mapPlot().

Other functions related to maps: formatPosition(), lonlat2map(), lonlat2utm(), map2lonlat(), mapArrows(), mapAxis(), mapContour(), mapCoordinateSystem(), mapDirectionField(), mapGrid(), mapLines(), mapLocator(), mapLongitudeLatitudeXY(), mapPlot(), mapPoints(), mapPolygon(), mapScalebar(), mapText(), mapTissot(), oceCRS(), oceProject(), shiftLongitude(), usrLonLat(), utm2lonlat()

oce documentation built on Sept. 11, 2024, 7:09 p.m.