oce: oce: A Package for Oceanographic Analysis

Description Specialized functions Generic methods Oceanographic data types handled Oce object structure


The oce package provides functions for working with Oceanographic data, for calculations that are specific to Oceanography, and for producing graphics that match the conventions of the field.

Specialized functions

A key function is read.oce, which will attempt to read Oceanographic data in raw format. This uses oceMagic to try to detect the file type, based on the file name and contents. If it proves impossible to detect the type, users should next try a more specialized function, e.g. read.ctd for CTD files, or read.ctd.sbe for Teledyne-Seabird files.

Generic methods

A list of the generic methods in oce is provided by 'methods(class="oce")'; a few that are used frequently are as follows.


Find the value of an item in the object's metadata or data slot. If the item does not exist, but can be calculated from the other items, then the calculated value is returned. As an example of the latter, consider the built-in ctd dataset, which does not contain potential temperature, "theta". Using ctd[["theta"]] therefore causes swTheta to be called, to calculate theta. See [[,oce-method or type ?"[[,oce-method" to learn more.


Alters the named item in the object's metadata or data slot. If the item does not exist, it is created. See [[<-,oce-method or type ?"[[<-,oce-method" to learn more.


Displays some information about the object named as an argument, including a few elements from its metadata slot and some statistics of the contents of its data slot. See summary,oce-method or type ?"summary,oce-method" to learn more.


Takes a subset of an oce object. See subset,oce-method or type ?"subset,oce-method" to learn more.

Oceanographic data types handled

Over a dozen specialized data types are handled by oce, with generic plots and summaries for each, along with the specialized functions needed for typical Oceanographic analysis.

Oce object structure

See oce-class for a summary of the class structure and links to documentation for the many subclasses of oce objects, each aligned with a class of instrument or or type of dataset.

oce documentation built on Jan. 29, 2018, 1:03 a.m.